Phage RBP Database

Genbank accession

XYM57505.1 [GenBank]

Protein name

tail collar domain-containing protein

RBP type

TF

Evidence RBPdetect

Probability 0,87

TF

Evidence RBPdetect2

Probability 0,67

Protein sequence

MANYARERGKYGGVVGAIQIFTSDLPLQGDPLDPNWRQKIPAGFLRCDGKIYDASDYPELAAVLGVGDGCKFKKPSQTLTETQFQVPDVGAKYLSPGLASGTYQSMVLAQNITENSSGNPRVGAEVLVSAQSNTFTIGYSGNFTVVGQSDVALQGNAKFAPPNEDRETGSAFLDSSSFQAHGHDTNAKVLNYTGNFKVGAEGKSGTDLTPFAGNTIFGSGNPTNDAASNHLHGISWPSTTDYSQNYVFQFPTFNVPADNLQTTLTVQTKTIDELPESVQPFILVEYIIKF

Physico‐chemical properties

protein length:	290 AA
molecular weight:	31101,05730 Da
isoelectric point:	4,87147
aromaticity:	0,10345
hydropathy:	-0,32552

Domain architecture

XYM57505.1

1 290 aa

ATT 9–89 · STR 90–289 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR037053
ATT

IPR037053

SSF88874
STR

SSF88874

IPR011083
ATT

IPR011083

XYM57505.1

1290 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0350
STR

DC_0350

XYM57505.1

1290 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR037053	ATT	IPR037053	9	89	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
SSF88874	STR	SSF88874	39	289	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR011083	ATT	DC_0235	40	65	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits

Proteins with similar domain architecture

Phage

Synechococcus phage Sf-CH1b [NCBI] · taxon 3413213

Viruses

Host No host information

Genbank protein accession

XYM57505.1 [NCBI]

Genbank nucleotide accession

PV340850 [NCBI]

CDS location

range 35815 -> 36687
strand +

CDS

ATGGCAAATTACGCAAGAGAACGAGGAAAATATGGCGGGGTTGTAGGAGCAATTCAAATTTTTACTAGTGATTTGCCTCTCCAAGGTGACCCTTTAGATCCAAATTGGAGGCAAAAAATTCCCGCAGGATTTTTACGCTGTGATGGTAAAATATATGATGCTAGTGATTATCCAGAACTAGCAGCAGTTTTAGGAGTTGGTGATGGTTGTAAGTTTAAGAAACCTTCGCAAACTTTAACTGAAACTCAATTTCAAGTACCTGATGTTGGTGCTAAGTATCTCTCTCCTGGTTTAGCATCAGGTACTTATCAGAGTATGGTTCTTGCTCAGAATATTACAGAAAATAGTAGTGGTAATCCTAGAGTTGGTGCAGAAGTTTTAGTGTCTGCACAGTCAAATACTTTTACTATTGGATATTCTGGAAACTTTACGGTTGTAGGTCAATCAGATGTTGCTTTGCAGGGAAATGCAAAATTTGCTCCGCCAAATGAAGACAGGGAAACAGGTTCTGCATTTCTGGATTCTAGTTCTTTCCAAGCACACGGTCACGACACTAACGCGAAAGTGTTGAACTATACAGGTAACTTTAAGGTTGGTGCTGAAGGTAAAAGTGGAACTGACTTAACACCATTTGCAGGCAATACTATTTTTGGATCTGGTAATCCTACCAATGATGCTGCATCAAACCATTTACACGGCATTAGTTGGCCATCAACAACTGATTATAGTCAGAATTATGTGTTCCAATTCCCTACATTTAATGTTCCTGCAGATAACTTGCAGACTACATTAACTGTACAGACAAAAACAATTGATGAGTTACCCGAGTCTGTCCAACCGTTCATTCTAGTTGAGTATATTATTAAGTTTTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)