Protein

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Genbank accession
XYM57505.1 [GenBank]
Protein name
tail collar domain-containing protein
RBP type
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MANYARERGKYGGVVGAIQIFTSDLPLQGDPLDPNWRQKIPAGFLRCDGKIYDASDYPELAAVLGVGDGCKFKKPSQTLTETQFQVPDVGAKYLSPGLASGTYQSMVLAQNITENSSGNPRVGAEVLVSAQSNTFTIGYSGNFTVVGQSDVALQGNAKFAPPNEDRETGSAFLDSSSFQAHGHDTNAKVLNYTGNFKVGAEGKSGTDLTPFAGNTIFGSGNPTNDAASNHLHGISWPSTTDYSQNYVFQFPTFNVPADNLQTTLTVQTKTIDELPESVQPFILVEYIIKF
Physico‐chemical
properties
protein length:290 AA
molecular weight: 31101,05730 Da
isoelectric point:4,87147
aromaticity:0,10345
hydropathy:-0,32552

Domains

Domains [InterPro]
IPR037053
9–89
IPR037053
SSF88874
39–289
SSF88874
IPR011083
40–65
IPR011083
XYM57505.1
1 290
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Sf-CH1b
[NCBI] 		3413213 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM57505.1 [NCBI]
Genbank nucleotide accession
PV340850 [NCBI]
CDS location
range 35815 -> 36687
strand +
CDS
ATGGCAAATTACGCAAGAGAACGAGGAAAATATGGCGGGGTTGTAGGAGCAATTCAAATTTTTACTAGTGATTTGCCTCTCCAAGGTGACCCTTTAGATCCAAATTGGAGGCAAAAAATTCCCGCAGGATTTTTACGCTGTGATGGTAAAATATATGATGCTAGTGATTATCCAGAACTAGCAGCAGTTTTAGGAGTTGGTGATGGTTGTAAGTTTAAGAAACCTTCGCAAACTTTAACTGAAACTCAATTTCAAGTACCTGATGTTGGTGCTAAGTATCTCTCTCCTGGTTTAGCATCAGGTACTTATCAGAGTATGGTTCTTGCTCAGAATATTACAGAAAATAGTAGTGGTAATCCTAGAGTTGGTGCAGAAGTTTTAGTGTCTGCACAGTCAAATACTTTTACTATTGGATATTCTGGAAACTTTACGGTTGTAGGTCAATCAGATGTTGCTTTGCAGGGAAATGCAAAATTTGCTCCGCCAAATGAAGACAGGGAAACAGGTTCTGCATTTCTGGATTCTAGTTCTTTCCAAGCACACGGTCACGACACTAACGCGAAAGTGTTGAACTATACAGGTAACTTTAAGGTTGGTGCTGAAGGTAAAAGTGGAACTGACTTAACACCATTTGCAGGCAATACTATTTTTGGATCTGGTAATCCTACCAATGATGCTGCATCAAACCATTTACACGGCATTAGTTGGCCATCAACAACTGATTATAGTCAGAATTATGTGTTCCAATTCCCTACATTTAATGTTCCTGCAGATAACTTGCAGACTACATTAACTGTACAGACAAAAACAATTGATGAGTTACCCGAGTCTGTCCAACCGTTCATTCTAGTTGAGTATATTATTAAGTTTTAA

Tertiary structure

PDB ID
fdb4d1440beeb936dba4c752c712cc239f1127d02e7f8011830db12e9ddc551b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6950
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50