Phage RBP Database

Genbank accession

QRV71444.1 [GenBank]

Protein name

SPRY domain containing protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect2

Probability 0,95

Protein sequence

MFVGMGANGASGGYNLENSLRFRSSASAYLNRTPATAGNRKIFTISLWMKGDLVSSPALFQARAASPTGQPHFVLMGSNGSLYILDQNAGTQAQIITTAVLRDPSAWYHVVVAIDTTEATAADRAKFYVNGDKLESFSTLDTFPLNYDTAVNNTVRHLVGARMPNSSTALVSYLDNYLTEVNFVDGQALTPSDFGETNSTTGVWQPKKYTGTYGTNGFYLKGRGTDNSGNGNNFTETNFNTTNSALATYDIMTDVPTLTDEDTANYATLNPLDAGTLNITVSNANLKFAVSANSWTAIRATIGISSGKWYWEITPLTGPDGNYFLNGIKDVTESIPAGTSQYVGVTSGSYGYYGATGNRYNNGSNSVYGSSFGVGDVVGVALDMDAGTLTFYKNNVSQGVAYSGLTGTFAPAFSLKGNTQTNTEAVNFGQRPFAYTPPTGYKKLNTFNLPDSSIVDGSENFNTVTYTGNGTSGRAITGVGFSPDLVWQKSRSNTYSNKLHDIIRGASTYLQSNTTTADVTQAQTIDSFDSDGFTVGNNVSYNGSGVTFVAWNWKAGGTAVSNTAGTITSQVSANPTAGFSVVTYTGTGGTKTVGHGLGVAPQMVIVKGRNGGTNWVVYHVGMGATKYMLMNTTGAAVTDSTPWNNTSPTSTVVSLGTSSNTNGNTAPFVAYCFADVEGYSKFGSYTGNGSADGPFVYTGFRPAYVLIKRTNAGASWFLWDSARNSYNLLDATLYPNLNIAEYINSTRALDLVSNGFKLRGTDSQMNASGGAYIYMAFAENPFKNSLAR

Physico‐chemical properties

protein length:	788 AA
molecular weight:	83636,10930 Da
isoelectric point:	5,93384
aromaticity:	0,11675
hydropathy:	-0,23744

Domain architecture

QRV71444.1

1 788 aa

STR 15–191 · STR 247–781 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR013320
STR

IPR013320 IPR001870 IPR055906

IPR013320
STR

IPR013320

IPR043136
STR

IPR043136

IPR050672
Unmapped

IPR050672

IPR003877
STR

IPR003877

cd11709
STR

cd11709

IPR003877
STR

IPR003877

QRV71444.1

1788 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1713
STR

DC_1713

QRV71444.1

1788 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR013320	STR	IPR013320	15	191	Merged direct domain	Concanavalin A-like lectin/glucanase domain superfamily	Central	Low	Positional only	237 proteins / 237 hits
IPR001870	STR	DC_0369	247	433	InterPro cluster	B30.2/SPRY domain	Central	Low	Positional only	17 proteins / 17 hits
IPR013320	STR	IPR013320	263	443	Merged direct domain	Concanavalin A-like lectin/glucanase domain superfamily	Central	Low	Positional only	237 proteins / 237 hits
IPR043136	STR	IPR043136	264	464	Merged direct domain	B30.2/SPRY domain superfamily	Central	Low	Positional only	2 proteins / 2 hits
IPR050672	Unmapped	-	277	414	InterPro	F-box/SPRY and SOCS box protein families	-	-	-	-
IPR003877	STR	DC_0034	306	432	InterPro cluster	SPRY domain	Central	Low	Positional only	6 proteins / 13 hits
cd11709	STR	DC_0034	307	420	InterPro cluster	SPRY	Central	Low	Positional only	6 proteins / 13 hits
IPR003877	STR	DC_0034	308	430	InterPro cluster	SPRY domain	Central	Low	Positional only	6 proteins / 13 hits
IPR055906	STR	DC_0846	457	781	InterPro cluster	Domain of unknown function DUF7483	Central	Low	Positional only	51 proteins / 75 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QRV71444.1

1 788 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	112	112	0,1020
Central domain	113	331	220	0,2899
C-terminal	332	788	456	0,8867

Note: Constraints were applied during segmentation.
Fixed 33 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Methylophilales phage MEP301 [NCBI] · taxon 2806696

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Methylophilales bacterium [NCBI] · taxon 2546201

cellular organisms Bacteria Pseudomonadati Pseudomonadota Betaproteobacteria Nitrosomonadales

Genbank protein accession

QRV71444.1 [NCBI]

Genbank nucleotide accession

MW452941 [NCBI]

CDS location

range 7172 -> 9538
strand -

CDS

ATGTTTGTAGGAATGGGTGCTAATGGTGCAAGTGGTGGTTATAACCTAGAGAACAGCTTACGCTTTCGTTCGTCTGCTTCAGCTTATTTAAATAGGACTCCTGCTACTGCAGGTAATCGTAAGATTTTTACTATATCTTTATGGATGAAGGGTGACCTTGTTTCCTCACCTGCATTATTTCAAGCTAGAGCAGCATCTCCAACTGGTCAGCCTCATTTTGTTCTTATGGGTAGTAATGGCTCTTTATATATACTAGACCAAAATGCAGGAACTCAAGCACAAATTATAACAACGGCTGTATTGCGTGACCCTTCAGCTTGGTATCATGTTGTAGTTGCTATAGACACTACTGAAGCAACTGCAGCAGACAGGGCTAAATTTTATGTTAATGGTGATAAGCTAGAATCATTTAGTACTTTAGACACTTTCCCTTTAAATTATGATACAGCGGTAAATAATACTGTTAGACATTTAGTTGGTGCAAGAATGCCAAATTCTAGTACAGCTCTTGTATCTTACCTTGACAACTACCTAACAGAAGTAAACTTCGTAGATGGACAAGCACTAACACCATCAGACTTCGGTGAAACCAATTCAACTACAGGTGTATGGCAACCTAAAAAATACACAGGCACATATGGTACTAACGGATTCTATTTAAAAGGTCGTGGTACAGATAACTCTGGTAATGGTAACAACTTTACTGAGACTAACTTTAACACAACCAATAGTGCATTAGCTACCTACGACATCATGACAGATGTACCCACACTAACCGATGAAGATACGGCTAACTATGCTACGCTGAATCCATTGGATGCAGGAACACTAAATATTACTGTTAGTAATGCCAATTTAAAATTTGCAGTTAGTGCTAATAGTTGGACAGCTATAAGAGCAACAATAGGTATATCAAGTGGTAAATGGTACTGGGAAATTACTCCACTAACTGGTCCTGATGGTAATTACTTTCTAAATGGTATTAAGGATGTTACAGAAAGTATACCTGCTGGAACAAGTCAGTATGTAGGAGTTACATCTGGTAGTTATGGATATTATGGTGCAACTGGAAATAGATATAACAATGGTTCTAATTCTGTCTATGGCTCTTCTTTCGGAGTAGGAGATGTTGTTGGTGTAGCTTTAGATATGGATGCAGGTACATTAACATTTTATAAAAATAATGTTTCTCAAGGGGTAGCTTACTCTGGTTTAACAGGAACATTTGCTCCTGCATTCTCTTTGAAGGGCAATACTCAAACAAATACTGAAGCAGTAAACTTCGGACAACGACCATTTGCCTACACACCACCTACAGGCTATAAAAAACTCAACACATTTAACCTACCTGATAGTAGCATTGTAGATGGTAGTGAGAATTTTAATACTGTGACTTATACAGGTAATGGCACATCTGGTCGTGCAATAACTGGTGTAGGATTCTCTCCTGATTTAGTTTGGCAAAAATCAAGAAGTAATACTTATAGTAATAAACTACACGATATAATCAGAGGTGCTTCTACATATTTACAGTCTAATACAACTACTGCTGACGTAACACAGGCACAGACTATAGATTCCTTTGATTCAGATGGTTTTACTGTAGGTAATAATGTATCATACAATGGCTCTGGTGTAACATTTGTAGCATGGAACTGGAAAGCAGGAGGTACAGCAGTATCTAACACAGCAGGAACAATAACATCACAAGTATCTGCTAACCCAACAGCAGGGTTTAGTGTGGTGACTTATACAGGAACAGGAGGTACTAAAACTGTAGGACATGGTTTAGGTGTTGCTCCTCAAATGGTCATAGTTAAAGGTAGAAATGGTGGGACAAACTGGGTTGTGTATCATGTTGGCATGGGAGCTACAAAATATATGCTAATGAATACAACAGGAGCAGCAGTAACTGATTCAACACCCTGGAATAATACCTCACCAACATCAACAGTAGTTAGTCTTGGTACATCAAGTAATACAAATGGGAATACAGCTCCCTTTGTAGCCTATTGCTTTGCTGATGTAGAAGGATACAGTAAGTTTGGTAGCTACACAGGTAATGGTTCTGCTGATGGACCATTTGTATACACAGGGTTTAGACCTGCTTATGTGTTGATTAAGAGGACTAATGCTGGAGCAAGTTGGTTTTTATGGGATTCTGCCAGAAATTCTTATAATTTATTAGATGCTACACTATATCCAAACTTAAATATTGCTGAATATATTAATTCAACCAGGGCTTTGGATTTAGTTTCAAACGGATTTAAACTACGAGGTACAGACTCTCAAATGAACGCTTCAGGTGGAGCATACATATACATGGCATTTGCCGAAAACCCTTTTAAAAATTCTTTAGCGAGGTAA

Title	Authors	Date	PMID	Source
Genomic characterization and distribution pattern of a novel marine OM43 phage	Zhao,Y.	2021	33841378	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature