Phage RBP Database

Genbank accession

XNT20181.1 [GenBank]

Protein name

variable tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,89

TF

Evidence RBPdetect2

Probability 0,98

Protein sequence

MTTNTPKYGGLLTDIGAAALAAASAAGKKWQPTHMLIGDAGGAPGDTPDPLPSAAQKSLINQRHRAQLNRLFVSDKNANTLVAEVVLPVEVGGFWIREIGLQDADGKFVAVSNCPPSYKAAMESGSARTQTIRVNIALSGLENVQLLIDNGIIYATQDWVKEKVAADFKGRKILAGNGLVGGGDLSADRSIGLAPSGVTAGSYRSVTVNANGVVTQGSNPSTLAGYAIGDAYTKADTDGKLAQKANKATTLAGYGITDALRVDGNAVSSSRLAAPRSLAASGDASWSVTFDGSANVSAPLSLSATGVAAGSYPKVTVDTKGRVTAGMALAATDIPGLDASKLVSGVLAEQRLPVFARGLATAVSTTSDPNTATVPLMLTNHANGPVAGRYFYIQSMFYPDQNGNASQIATSYNATSEMYVRVSYAANPSARDWLPWKRCDIGGSFSKEADGALGGAVNLNSLITSGWWYQTANAQAESGANYPVPRAGLLQVHNAGTNFIYQTYQVYDGEGFYFRCRYTNTWYPWRRVWHGADFNPNDYLLKSGFTWAALPGKPATFPPTGHNHDAAQITSGILPLARGGLGSNTAAGARNNIGAGVPATANRSLNGWWKDNDTGLIVQWMTVSVGDHPGGIVNRSLTFPIAFPTTCLHVVPSVKELGRPATSASTVTLADVSVSTTGCVIVATEYHGAVQNYAIRLVAIGC

Physico‐chemical properties

protein length:	702 AA
molecular weight:	73273,37660 Da
isoelectric point:	8,77732
aromaticity:	0,08120
hydropathy:	-0,07379

Domain architecture

XNT20181.1

1 702 aa

ATT 7–158 · STR 360–440 · STR 451–529 · RBD 601–701 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR051934
Unmapped

IPR051934

IPR022225
ATT

IPR022225 cd19958 cd19958 G3DSA:2.60.40.3940

IPR054075
RBD

IPR054075

XNT20181.1

1702 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0787
STR

DC_0787

XNT20181.1

1702 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR051934	Unmapped	-	1	649	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
IPR022225	ATT	DC_0271	7	158	InterPro cluster	Phage tail fibre protein, N-terminal domain	Central	Medium	Text match	271 proteins / 271 hits
cd19958	STR	DC_0464	360	440	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
cd19958	STR	DC_0464	451	529	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
G3DSA:2.60.40.3940	RBD	G3DSA:2.60.40.3940	601	701	Merged direct domain	G3DSA:2.60.40.3940	C-terminal	Low	Positional only	77 proteins / 77 hits
IPR054075	RBD	DC_0717	613	701	InterPro cluster	Putative tail fiber protein gp53-like, C-terminal	C-terminal	Low	Positional only	174 proteins / 174 hits

Proteins with similar domain architecture

Phage

Pseudomonas phage sp. [NCBI] · taxon 2729638

Viruses

Host

Pseudomonas aeruginosa [NCBI] · taxon 287

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales

Genbank protein accession

XNT20181.1 [NCBI]

Genbank nucleotide accession

OQ658366.1 [NCBI]

CDS location

range 10324 -> 12432
strand -

CDS

ATGACGACCAATACTCCGAAATACGGTGGCCTGCTCACCGACATAGGTGCCGCTGCGCTGGCTGCGGCCAGCGCAGCAGGCAAGAAATGGCAGCCGACTCATATGCTGATCGGCGATGCCGGCGGTGCGCCGGGCGACACGCCGGATCCATTGCCTTCTGCGGCGCAGAAGAGCCTGATCAACCAACGCCATCGGGCTCAGCTGAATCGGCTGTTCGTTTCCGACAAGAACGCCAATACCTTGGTTGCCGAGGTGGTGCTGCCAGTTGAGGTAGGTGGCTTCTGGATCCGCGAGATCGGCCTGCAGGATGCCGACGGCAAGTTCGTCGCGGTATCCAACTGCCCGCCCAGCTACAAAGCTGCAATGGAAAGTGGCAGTGCGCGGACCCAGACCATTCGGGTGAACATCGCGCTCTCCGGCCTGGAGAATGTCCAGCTGCTGATCGACAACGGCATCATCTACGCCACTCAGGACTGGGTGAAGGAAAAGGTCGCTGCCGATTTCAAGGGCCGCAAGATTCTGGCTGGCAATGGCCTGGTCGGTGGGGGCGATCTTTCTGCCGACCGCAGCATTGGCCTGGCGCCTTCCGGCGTGACGGCGGGCAGCTATCGCTCGGTCACGGTGAACGCCAACGGGGTGGTCACCCAGGGCAGCAATCCGAGCACCCTGGCCGGCTATGCGATCGGAGATGCCTATACCAAGGCCGATACCGACGGAAAACTGGCGCAGAAAGCGAACAAGGCCACCACCCTGGCCGGCTATGGCATCACCGATGCGCTGCGAGTCGATGGCAACGCCGTGTCATCCAGCAGGCTGGCCGCACCGCGTAGCCTGGCAGCCAGTGGCGATGCCTCCTGGTCGGTGACCTTCGACGGCAGTGCCAATGTTTCTGCGCCGCTGAGTCTTTCCGCTACCGGTGTGGCAGCGGGCAGCTATCCGAAGGTGACCGTGGATACGAAAGGAAGGGTGACTGCTGGAATGGCGCTGGCGGCGACGGACATTCCCGGGCTGGATGCTTCGAAGTTGGTCAGCGGGGTGCTGGCCGAGCAGCGTTTGCCGGTATTCGCGCGCGGGTTGGCTACTGCTGTCTCGACCACTAGCGATCCGAACACCGCGACCGTGCCGTTGATGCTGACCAATCATGCGAACGGACCTGTTGCCGGACGGTACTTCTACATCCAGTCGATGTTCTATCCGGATCAGAACGGCAATGCTTCGCAGATTGCAACGAGCTACAACGCTACATCCGAGATGTATGTACGGGTGTCCTACGCGGCCAACCCTAGCGCCCGGGACTGGCTGCCCTGGAAGCGCTGCGACATAGGTGGTTCGTTCAGCAAGGAGGCGGACGGGGCCTTGGGCGGTGCGGTCAATCTCAACTCGCTGATCACGTCGGGATGGTGGTACCAGACGGCCAATGCACAGGCCGAAAGTGGGGCGAACTACCCGGTCCCCCGGGCCGGCTTGCTTCAAGTGCATAATGCAGGCACCAATTTCATCTACCAGACATACCAGGTTTACGACGGTGAAGGGTTCTATTTTCGTTGCCGCTACACCAACACCTGGTATCCATGGCGGCGTGTATGGCATGGGGCGGACTTCAATCCGAACGACTATCTGCTGAAAAGTGGCTTTACGTGGGCCGCCCTGCCAGGAAAGCCGGCGACCTTTCCGCCTACTGGCCACAACCACGACGCCGCCCAGATCACGTCGGGCATCCTGCCTCTGGCGCGCGGCGGTCTTGGTTCGAATACGGCAGCGGGGGCGCGCAACAATATCGGGGCTGGGGTTCCCGCGACGGCGAACCGATCGCTGAATGGCTGGTGGAAGGATAACGATACAGGACTCATCGTGCAGTGGATGACAGTGAGTGTCGGCGATCATCCGGGTGGAATCGTCAACCGCTCGCTGACCTTTCCGATCGCGTTTCCCACTACCTGCCTGCACGTGGTGCCGAGCGTCAAGGAACTGGGGCGGCCGGCGACGTCGGCATCGACCGTCACCCTCGCAGATGTCAGCGTCAGCACCACGGGGTGTGTGATTGTCGCTACCGAGTATCACGGTGCGGTCCAGAACTATGCGATCAGGCTTGTGGCCATTGGCTGTTGA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)