Protein

View in Explore
Genbank accession
YP_009819524.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,62
TSP
Evidence RBPdetect2
Probability 0,82
Protein sequence
MSNNKLITSTAPGVAPTTQQLGPHQLGVSTKDSKIYVNNGTEIIDVLGLVFEVPQTVTATRSYVVDGAALSISPETANNSFYMSFKTAAQTEVGRLGKVTTSSSNHDIKLQGIGAVGLHRDYITNDDHQMVLMSDGRTIVSAKPTSDGIFLRPKGYSETDNQWSIDSGGTVRHRHESGTAYDIRDSVDSGVGSSSYMAWTHDDAVRRGWFGYGSASDNHFSWRNEEGAGVPEIVLQEGGRIKLNPGTDNAVDAENSAIYYGRSYCNAAVGGSWGHSSFAALALLNTTSGPAYTVFKMGTDGPKLQALGEGGSTVRLYPGGGNANFTAWLPNSWTHYYTGTSPMSWDMFAETANVNTSIRMREDGNNHGVEFGYAGASNNNEFFLNMRQGGSDNRAFSIYRDRSRAVFNTERLDVESSGAEKMLLYRADGDANVNIRYSSSSGADVWAGKTTNNFAIGSASDLSSAGNQWMIIGSAAATFRVPVVLEGGSPSGSHAIRRDWAEDNLFRRNVQSVTSQDWNTLYNSGFSSVNNGVGLNQPSAPIVGNAYTYGSLLSMSHTNTNSGVKTQLYFPHNASSPDTTPRLPVYRSGYTSDYGNWRTLLTLQYADIRYTQTSSDINLKTDIAEIQDATSIVNALGTYSFLKQNAEVKFLKEEGEYQGQEEEYSFEMGFIAQEVEKVLPHLVGEDQFGYKTIKSKDNTLLAVAYQALKESNKRVDDLETRLKALEKLLGVI
Physico‐chemical
properties
protein length:732 AA
molecular weight: 79628,76110 Da
isoelectric point:5,41701
aromaticity:0,09699
hydropathy:-0,45150

Domains

View on InterPro
Domain architecture
YP_009819524.1
1 732 aa
STR 509–598 · CHP 615–722 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009819524.1
1 732 aa
Domain Start End Length (AA) Confidence
N-terminal 1 14 14 0,9589
Central domain 15 213 200 0,1230
C-terminal 214 732 518 0,9455
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Vibrio phage VspSw_1 [NCBI] · taxon 2484249
Uroviricota Caudoviricetes Demerecviridae Pogseptimavirus VspSw1
Host
Vibrio sp. [NCBI] · taxon 678
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales

Coding sequence (CDS)

Genbank protein accession
YP_009819524.1 [NCBI]
Genbank nucleotide accession
NC_048151 [NCBI]
CDS location
range 5039 -> 7237
strand +
CDS
ATGTCTAATAATAAACTAATAACATCTACGGCACCTGGAGTAGCTCCCACTACACAGCAACTGGGCCCTCATCAGTTAGGTGTTAGTACCAAAGACTCTAAGATATACGTCAACAACGGTACTGAAATAATTGACGTATTAGGGCTAGTATTTGAGGTACCTCAAACAGTAACAGCTACTAGGAGTTACGTTGTGGATGGGGCAGCACTCTCTATATCTCCAGAAACCGCCAATAACTCTTTCTACATGTCATTTAAGACAGCGGCCCAAACAGAGGTTGGTAGGTTAGGTAAAGTAACAACCAGCTCTAGTAATCACGATATTAAGCTGCAAGGTATTGGTGCTGTTGGGTTACACAGGGATTATATCACTAATGATGACCATCAAATGGTATTGATGTCCGACGGTAGAACCATAGTCTCAGCGAAACCTACTTCGGACGGAATCTTCCTACGACCTAAAGGATATAGCGAAACGGATAATCAGTGGAGTATAGATAGCGGAGGTACTGTAAGGCATCGCCATGAATCAGGTACTGCGTATGACATTAGAGATTCGGTGGACTCGGGTGTAGGTAGCTCTTCTTACATGGCCTGGACCCATGATGATGCCGTCCGCAGAGGTTGGTTTGGTTATGGCTCTGCTAGCGATAATCACTTCTCTTGGAGAAACGAGGAAGGGGCAGGAGTACCTGAGATAGTGCTACAAGAAGGTGGTAGGATAAAACTTAACCCAGGGACAGATAACGCTGTAGATGCGGAAAACTCAGCTATATACTACGGCCGCAGCTACTGTAATGCTGCCGTAGGTGGTTCGTGGGGGCATAGTTCATTCGCCGCTTTAGCGCTATTGAATACAACATCAGGGCCGGCCTATACAGTGTTTAAGATGGGAACCGACGGTCCTAAGCTACAAGCATTAGGTGAAGGGGGTAGTACTGTACGCCTGTATCCTGGCGGTGGTAATGCGAACTTTACTGCATGGTTGCCTAATTCCTGGACGCACTACTATACCGGCACTAGCCCTATGAGTTGGGATATGTTTGCTGAAACAGCTAACGTCAATACCTCTATTCGAATGAGAGAAGACGGTAACAACCATGGTGTTGAGTTCGGGTACGCAGGTGCCTCTAACAATAACGAGTTCTTCTTGAATATGCGACAAGGCGGCTCAGATAACCGTGCATTTAGTATTTACCGAGACCGTAGTCGCGCAGTCTTCAATACAGAACGACTGGATGTTGAATCTAGTGGTGCTGAGAAGATGCTTCTGTACCGTGCGGATGGTGATGCTAACGTAAATATTCGTTACTCTAGTAGCTCTGGTGCTGACGTATGGGCAGGTAAAACTACAAACAACTTCGCTATTGGTAGTGCTTCAGACTTATCTTCTGCAGGCAATCAATGGATGATTATTGGTAGTGCCGCAGCTACTTTCCGTGTACCTGTTGTGTTGGAGGGCGGTTCACCTTCAGGCAGCCATGCTATTCGTCGTGATTGGGCTGAAGATAACTTATTCCGCCGCAATGTGCAGAGTGTTACTTCTCAGGACTGGAATACGTTATACAACTCTGGGTTTTCATCAGTTAATAATGGCGTTGGTTTAAACCAGCCTAGCGCACCTATTGTTGGCAACGCCTACACGTATGGTTCATTGTTGTCTATGTCGCACACTAATACAAACTCTGGTGTTAAAACACAGTTATATTTTCCACATAATGCAAGTAGTCCAGACACGACACCGCGATTACCAGTCTACCGTTCAGGATATACTAGTGATTACGGTAACTGGCGTACTCTGCTGACATTACAGTACGCAGACATTAGATATACACAGACGTCTTCTGATATCAACCTAAAAACTGATATCGCCGAGATTCAGGACGCTACCAGCATAGTTAATGCACTAGGTACTTACTCTTTCCTAAAACAGAATGCTGAAGTTAAGTTCTTGAAAGAGGAAGGAGAATACCAAGGACAAGAAGAAGAGTACTCCTTCGAAATGGGCTTCATAGCTCAGGAAGTGGAGAAAGTACTACCTCACTTAGTGGGAGAAGACCAGTTTGGTTACAAAACCATTAAGTCCAAGGATAATACGCTACTGGCTGTAGCATACCAAGCTCTTAAAGAATCCAACAAGAGAGTAGACGACCTAGAAACTAGGCTCAAAGCCCTAGAAAAACTTTTAGGCGTTATATAA

Genome Context

Tertiary structure

YP_009819524.1
ESMFold structure
Source ESMFold
pLDDT 64.3
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Characterization and complete genomic analysis of VspSw_1 Chen,L. 2024-12-16 — GenBank