Protein

View in Explore
Genbank accession
YP_009819524.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,62
TF
Evidence RBPdetect2
Probability 0,81
Protein sequence
MSNNKLITSTAPGVAPTTQQLGPHQLGVSTKDSKIYVNNGTEIIDVLGLVFEVPQTVTATRSYVVDGAALSISPETANNSFYMSFKTAAQTEVGRLGKVTTSSSNHDIKLQGIGAVGLHRDYITNDDHQMVLMSDGRTIVSAKPTSDGIFLRPKGYSETDNQWSIDSGGTVRHRHESGTAYDIRDSVDSGVGSSSYMAWTHDDAVRRGWFGYGSASDNHFSWRNEEGAGVPEIVLQEGGRIKLNPGTDNAVDAENSAIYYGRSYCNAAVGGSWGHSSFAALALLNTTSGPAYTVFKMGTDGPKLQALGEGGSTVRLYPGGGNANFTAWLPNSWTHYYTGTSPMSWDMFAETANVNTSIRMREDGNNHGVEFGYAGASNNNEFFLNMRQGGSDNRAFSIYRDRSRAVFNTERLDVESSGAEKMLLYRADGDANVNIRYSSSSGADVWAGKTTNNFAIGSASDLSSAGNQWMIIGSAAATFRVPVVLEGGSPSGSHAIRRDWAEDNLFRRNVQSVTSQDWNTLYNSGFSSVNNGVGLNQPSAPIVGNAYTYGSLLSMSHTNTNSGVKTQLYFPHNASSPDTTPRLPVYRSGYTSDYGNWRTLLTLQYADIRYTQTSSDINLKTDIAEIQDATSIVNALGTYSFLKQNAEVKFLKEEGEYQGQEEEYSFEMGFIAQEVEKVLPHLVGEDQFGYKTIKSKDNTLLAVAYQALKESNKRVDDLETRLKALEKLLGVI
Physico‐chemical
properties
protein length:732 AA
molecular weight: 79628,76110 Da
isoelectric point:5,41701
aromaticity:0,09699
hydropathy:-0,45150

Domains

Domains [InterPro]
cd19958
509–598
cd19958 IPR030392
IPR030392
615–683
IPR030392 Coil
Coil
643–663
Coil
YP_009819524.1
1 732
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VspSw_1
[NCBI] 		2484249 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009819524.1 [NCBI]
Genbank nucleotide accession
NC_048151 [NCBI]
CDS location
range 5039 -> 7237
strand +
CDS
ATGTCTAATAATAAACTAATAACATCTACGGCACCTGGAGTAGCTCCCACTACACAGCAACTGGGCCCTCATCAGTTAGGTGTTAGTACCAAAGACTCTAAGATATACGTCAACAACGGTACTGAAATAATTGACGTATTAGGGCTAGTATTTGAGGTACCTCAAACAGTAACAGCTACTAGGAGTTACGTTGTGGATGGGGCAGCACTCTCTATATCTCCAGAAACCGCCAATAACTCTTTCTACATGTCATTTAAGACAGCGGCCCAAACAGAGGTTGGTAGGTTAGGTAAAGTAACAACCAGCTCTAGTAATCACGATATTAAGCTGCAAGGTATTGGTGCTGTTGGGTTACACAGGGATTATATCACTAATGATGACCATCAAATGGTATTGATGTCCGACGGTAGAACCATAGTCTCAGCGAAACCTACTTCGGACGGAATCTTCCTACGACCTAAAGGATATAGCGAAACGGATAATCAGTGGAGTATAGATAGCGGAGGTACTGTAAGGCATCGCCATGAATCAGGTACTGCGTATGACATTAGAGATTCGGTGGACTCGGGTGTAGGTAGCTCTTCTTACATGGCCTGGACCCATGATGATGCCGTCCGCAGAGGTTGGTTTGGTTATGGCTCTGCTAGCGATAATCACTTCTCTTGGAGAAACGAGGAAGGGGCAGGAGTACCTGAGATAGTGCTACAAGAAGGTGGTAGGATAAAACTTAACCCAGGGACAGATAACGCTGTAGATGCGGAAAACTCAGCTATATACTACGGCCGCAGCTACTGTAATGCTGCCGTAGGTGGTTCGTGGGGGCATAGTTCATTCGCCGCTTTAGCGCTATTGAATACAACATCAGGGCCGGCCTATACAGTGTTTAAGATGGGAACCGACGGTCCTAAGCTACAAGCATTAGGTGAAGGGGGTAGTACTGTACGCCTGTATCCTGGCGGTGGTAATGCGAACTTTACTGCATGGTTGCCTAATTCCTGGACGCACTACTATACCGGCACTAGCCCTATGAGTTGGGATATGTTTGCTGAAACAGCTAACGTCAATACCTCTATTCGAATGAGAGAAGACGGTAACAACCATGGTGTTGAGTTCGGGTACGCAGGTGCCTCTAACAATAACGAGTTCTTCTTGAATATGCGACAAGGCGGCTCAGATAACCGTGCATTTAGTATTTACCGAGACCGTAGTCGCGCAGTCTTCAATACAGAACGACTGGATGTTGAATCTAGTGGTGCTGAGAAGATGCTTCTGTACCGTGCGGATGGTGATGCTAACGTAAATATTCGTTACTCTAGTAGCTCTGGTGCTGACGTATGGGCAGGTAAAACTACAAACAACTTCGCTATTGGTAGTGCTTCAGACTTATCTTCTGCAGGCAATCAATGGATGATTATTGGTAGTGCCGCAGCTACTTTCCGTGTACCTGTTGTGTTGGAGGGCGGTTCACCTTCAGGCAGCCATGCTATTCGTCGTGATTGGGCTGAAGATAACTTATTCCGCCGCAATGTGCAGAGTGTTACTTCTCAGGACTGGAATACGTTATACAACTCTGGGTTTTCATCAGTTAATAATGGCGTTGGTTTAAACCAGCCTAGCGCACCTATTGTTGGCAACGCCTACACGTATGGTTCATTGTTGTCTATGTCGCACACTAATACAAACTCTGGTGTTAAAACACAGTTATATTTTCCACATAATGCAAGTAGTCCAGACACGACACCGCGATTACCAGTCTACCGTTCAGGATATACTAGTGATTACGGTAACTGGCGTACTCTGCTGACATTACAGTACGCAGACATTAGATATACACAGACGTCTTCTGATATCAACCTAAAAACTGATATCGCCGAGATTCAGGACGCTACCAGCATAGTTAATGCACTAGGTACTTACTCTTTCCTAAAACAGAATGCTGAAGTTAAGTTCTTGAAAGAGGAAGGAGAATACCAAGGACAAGAAGAAGAGTACTCCTTCGAAATGGGCTTCATAGCTCAGGAAGTGGAGAAAGTACTACCTCACTTAGTGGGAGAAGACCAGTTTGGTTACAAAACCATTAAGTCCAAGGATAATACGCTACTGGCTGTAGCATACCAAGCTCTTAAAGAATCCAACAAGAGAGTAGACGACCTAGAAACTAGGCTCAAAGCCCTAGAAAAACTTTTAGGCGTTATATAA

Tertiary structure

PDB ID
d1f9ebc0ce42a2cd4cf72abead6a1c4a9190ff170bf4b15dbbf959499b7c31ed
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6426
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genomic analysis of VspSw_1 Chen,L. 2024-12-16 — GenBank