Phage RBP Database

Genbank accession

YP_009787657.1 [GenBank]

Protein name

central tail fiber J

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,82

TF

Evidence RBPdetect2

Probability 0,92

Protein sequence

MTNIKARKGGSSQPRTPVEMPDNLISKDKIKLLLAVSDGEVVDDFSLKQLHFGGVPVQNEDGTFNYEGVIAEFRPGTQTQDYIQGFSESSAEFQVARDVTHNTPYTLTVSNKNLSAIRFRLLWPRVLTQKDNGDMVGSVVEYKIEMAVDGASYQTYLTGKIDGKNTTGGYDRSIRVNLPQDFTSQVLIRVSRVTPDADGVKVVDAFQVQSYAEVIDAKFRYPLTAMLYVEFDSDLFQNQIPTISLKKKWKIIQVPSNYDPINRTYSGTWDGVFKWAWSNNPAWVLYDLIMNQRYGLDQRELGIPVDKWSLYEVAQYCDELVPDNRGGMEPRYLMDVIVQSQVEAFQLVRDVCSAFRGMTFYNGESLSIIVDKPRDPVYLFTADNVVDGVFVRTFPSEKTMYTSCNVMFDDEENQYEQDVEPVFNADAAMRFGHNPTSITAIGCTRRTEANRRGRWILQTNLSATTVSFSTGLEGMIPSCGDVIYVADPHWQSAFNLVLSGRIMEVTGTQVFLAFRCDAKAGDTLILNTDDGKPVRRTIASVSADGKTITLNVGFNFDVAPDSVFLIESDQLAAEQYVVTRIEKGSDDDEFTFAITATQYNPNKYDAIDNGVITDDRPTSVVDPDSLGAPKDLTISSFSRIVQGMSVETMVIGWSAVQYAKLYEVQWRKDGGNWNNVPRTATTQVDIEGIYAGEYQARVRCISGGNVASPWSALATATLTGKVGAPKGPINLFASDNEIFGIRVKWAMPEGAEDTAYIELYQSQSGTDQDASLLTMIPYPASEYWHSILPAGYVNFYKARSVDRIGNVSAWTDYARGMSSTDVNAITDTILDEILDSDAMKELQVSAQDSAAKLNDYANSIIQNALANDGDVRIMRKENGKRKAEIKRAEVLIANETEARVQQVNQISAEFNENLNSGLTQVNEALANETEARVTSEEALSARIGQNSAALDQKLDSWANVNGVGSMYTMKLGLTYNGQEYNSGMALQLTSQGGNVVSQVLFIADRFAIIRNAESGAYTLPFVVQNDQVFMNNALIQDGSITNAKIGNVIQSNNYIAGQQGWVINKNGGSEFNNVTVRGHIEANSGTFKGTIEAQSFIGDIAVARRYDDLSFRRNNTVQRDGYYQNRGYGMTIVLSCTLIYEVTGGEDDRNGYIVEVTFNIGGQQVTRLFPVNPRLTSGTYAAEFRFSADIPANYSNTSFFVKAKGRDANWDYSCQVENITATAFRTNSNSFT

Physico‐chemical properties

protein length:	1232 AA
molecular weight:	136522,87540 Da
isoelectric point:	4,76756
aromaticity:	0,09903
hydropathy:	-0,30982

Domain architecture

YP_009787657.1

1 1232 aa

ATT 90–217 · ATT 341–489 · STR 627–720 · RBD 950–1086 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171 Coil IPR015406

IPR055385
ATT

IPR055385 IPR032876 IPR013783

IPR036116
STR

IPR036116

YP_009787657.1

11232 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0014
STR

DC_0014

YP_009787657.1

11232 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	3	875	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	90	217	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	341	489	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR013783	STR	IPR013783	627	720	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR036116	STR	IPR036116	629	716	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
Coil	Unmapped	-	893	913	Coils	Coil	-	-	-	-
IPR015406	RBD	DC_0135	950	1086	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009787657.1

1 1232 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	501	501	0,8863
Central domain	502	1051	551	0,0605
C-terminal	1052	1232	180	0,7541

Note: Constraints were applied during segmentation.
Fixed 34 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage vB_KpnS_KpV522 [NCBI] · taxon 1912320

Uroviricota Caudoviricetes Drexlerviridae Webervirus KpV522

Host

Klebsiella pneumoniae [NCBI] · taxon 573

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YP_009787657.1 [NCBI]

Genbank nucleotide accession

NC_047784.1 [NCBI]

CDS location

range 24287 -> 27985
strand +

CDS

ATGACTAATATCAAGGCCCGCAAGGGCGGTTCCAGCCAGCCGCGAACCCCGGTAGAAATGCCTGATAACCTGATCTCGAAAGACAAGATCAAGTTATTGCTGGCCGTTTCTGACGGCGAAGTAGTGGATGACTTCAGCCTGAAGCAGTTGCATTTCGGCGGCGTTCCGGTTCAGAACGAAGATGGAACTTTCAACTATGAAGGCGTGATCGCTGAGTTCCGCCCAGGCACGCAAACGCAGGACTATATCCAGGGCTTCAGTGAGTCAAGCGCTGAATTCCAGGTTGCTCGCGACGTTACTCACAATACGCCGTATACGCTTACCGTATCGAACAAAAATCTGTCTGCCATTCGCTTCCGCCTGCTATGGCCGCGAGTACTGACTCAAAAAGATAACGGCGATATGGTCGGATCGGTTGTTGAGTACAAGATCGAGATGGCGGTAGACGGCGCAAGTTATCAGACTTACCTAACTGGCAAGATTGACGGTAAGAACACGACTGGCGGTTACGATCGGAGCATTCGCGTTAACCTGCCGCAAGACTTCACGTCGCAGGTGCTTATACGCGTTAGCCGAGTAACGCCGGACGCTGACGGGGTGAAGGTTGTCGATGCTTTCCAGGTTCAATCCTACGCTGAAGTTATTGATGCCAAATTCCGCTACCCGTTAACGGCCATGCTTTACGTTGAGTTTGATAGCGACCTGTTCCAGAACCAGATCCCAACAATCTCACTCAAAAAGAAATGGAAGATTATCCAGGTTCCGAGCAACTACGATCCGATTAATCGCACGTATTCAGGAACGTGGGACGGTGTTTTTAAGTGGGCGTGGAGCAATAACCCGGCATGGGTGCTTTATGACCTGATCATGAATCAGCGCTATGGTTTAGACCAGCGCGAACTTGGCATCCCGGTTGATAAGTGGTCGCTGTATGAGGTGGCGCAATACTGTGATGAGCTTGTGCCGGACAATCGCGGCGGGATGGAGCCTCGCTATTTGATGGATGTAATTGTTCAGTCGCAGGTTGAGGCGTTCCAGTTGGTAAGGGATGTTTGTTCCGCTTTCCGTGGAATGACGTTCTACAACGGTGAAAGCCTTTCGATTATCGTCGATAAGCCGCGCGATCCGGTGTACCTGTTTACGGCTGATAACGTCGTTGACGGCGTTTTCGTTCGGACGTTCCCAAGCGAAAAGACGATGTACACGTCGTGCAACGTCATGTTCGACGACGAAGAAAACCAGTACGAACAGGACGTTGAACCAGTATTCAACGCTGACGCTGCCATGCGGTTCGGTCACAACCCGACAAGCATCACAGCGATCGGTTGCACCAGACGAACAGAAGCAAACCGCCGTGGGCGCTGGATTCTGCAAACGAACCTAAGCGCAACCACTGTTTCGTTTTCTACTGGCCTGGAAGGCATGATCCCGTCATGCGGCGATGTGATTTACGTTGCAGATCCGCACTGGCAATCAGCCTTTAACCTTGTGTTGTCAGGTCGCATTATGGAAGTAACGGGAACGCAGGTTTTCCTGGCTTTCCGCTGCGACGCGAAGGCGGGAGATACGCTGATTCTGAACACTGACGACGGCAAGCCTGTGCGCCGGACAATCGCCAGCGTTTCGGCTGACGGTAAAACCATCACGCTAAACGTGGGATTTAATTTTGACGTTGCGCCTGACAGTGTATTCCTGATCGAAAGTGATCAGCTTGCAGCGGAACAGTATGTAGTAACCCGGATTGAAAAGGGTAGTGATGACGATGAGTTCACTTTCGCGATCACTGCTACGCAGTACAACCCGAACAAGTATGACGCGATCGACAACGGAGTAATTACCGATGACCGCCCAACTTCGGTTGTTGACCCGGACTCATTGGGCGCTCCGAAAGACTTAACGATTAGTTCATTTTCTCGCATAGTACAGGGGATGAGCGTCGAGACGATGGTGATCGGTTGGTCTGCCGTGCAGTATGCAAAACTGTACGAGGTGCAATGGCGCAAGGATGGCGGTAACTGGAACAACGTTCCGCGCACTGCGACAACGCAGGTTGATATTGAAGGTATCTATGCTGGTGAGTATCAGGCCCGCGTAAGGTGCATTAGCGGCGGGAATGTAGCGTCACCGTGGTCTGCATTGGCAACTGCTACGCTGACCGGGAAAGTCGGAGCGCCAAAAGGCCCGATTAACCTGTTTGCGTCGGATAATGAGATCTTCGGCATTCGCGTTAAGTGGGCTATGCCGGAAGGAGCGGAAGACACGGCATACATTGAACTTTACCAGTCTCAAAGTGGAACCGATCAGGACGCAAGCCTGCTTACCATGATTCCTTACCCGGCTTCTGAATACTGGCATTCAATTCTTCCCGCTGGCTACGTGAACTTCTACAAAGCCAGAAGCGTAGACCGTATCGGCAACGTTTCAGCGTGGACTGATTACGCTCGCGGCATGTCGTCTACTGACGTTAACGCCATCACGGATACGATCCTGGATGAGATCCTCGACAGCGACGCGATGAAAGAACTTCAGGTGAGTGCACAGGATAGTGCGGCAAAACTCAATGACTACGCTAACAGCATCATCCAAAACGCATTAGCGAATGATGGAGATGTTAGAATCATGAGAAAGGAGAATGGAAAGAGGAAGGCTGAGATTAAACGCGCAGAAGTTCTCATAGCAAATGAGACGGAAGCCAGGGTGCAGCAGGTTAACCAGATATCGGCAGAGTTCAACGAAAACCTCAATTCTGGATTAACTCAAGTTAACGAGGCGTTGGCGAATGAAACTGAGGCTCGCGTTACGTCGGAGGAGGCGCTATCAGCAAGGATTGGCCAGAACTCCGCAGCGCTAGATCAGAAACTTGATTCGTGGGCAAACGTTAATGGAGTTGGTTCCATGTATACAATGAAGCTAGGGCTGACTTACAACGGCCAGGAATACAATTCCGGGATGGCCCTACAGCTTACATCACAGGGTGGAAACGTTGTTTCGCAAGTTCTGTTTATTGCTGATAGATTCGCCATCATCCGAAATGCGGAGTCTGGAGCGTACACGTTGCCTTTTGTTGTGCAGAATGACCAGGTTTTCATGAATAACGCGCTTATTCAGGACGGTTCGATTACCAACGCGAAGATCGGTAACGTCATTCAGTCCAACAACTACATCGCTGGGCAGCAAGGCTGGGTGATTAACAAGAACGGCGGTTCTGAGTTTAATAACGTTACCGTTCGCGGCCATATCGAGGCTAATAGCGGAACGTTCAAGGGTACGATTGAGGCTCAGAGCTTCATCGGTGATATTGCAGTTGCCAGAAGATATGATGACTTGAGCTTTCGCAGAAACAATACCGTTCAGCGTGACGGGTACTATCAAAATCGTGGTTATGGAATGACGATAGTTCTTAGTTGCACATTAATCTATGAGGTTACAGGGGGTGAAGACGATAGAAACGGATATATTGTTGAAGTTACGTTCAATATTGGAGGGCAGCAGGTAACTAGACTTTTTCCAGTTAACCCAAGGCTAACATCCGGTACTTATGCTGCTGAATTTCGATTTTCTGCTGATATTCCAGCAAATTACAGTAACACTTCTTTCTTTGTGAAAGCGAAAGGGAGAGACGCAAATTGGGATTATAGTTGTCAAGTGGAGAACATCACAGCAACCGCATTCCGCACAAACTCAAATAGCTTTACATAA

Title	Authors	Date	PMID	Source
Complete genome sequence of bacteriophage vB_KpnS_KpV522 lytic for Klebsiella pneumoniae	Komisarova,E.V., Krasilnikova,V.M., Kislichkina,A.A., Myakinina,V.P. and Volozhantsev,N.V.	2017-09-14	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature