Protein

View in Explore
Genbank accession
AMO43040.1 [GenBank]
Protein name
putative short tail fiber
RBP type
TF
Evidence RBPdetect
Probability 0,75
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MPFYQESKTARAAAIGTIMPWTGNISSIPAGWIICDGSSIPAADYPLLARAMQDTYNSGTTSTFAGTFPNYSGNIVLPSILNRPVCDIETQYFGSSSPITSDAGEVHRNNIAATEITPYIGPNTDNGINTTWNDVSTDVIFTLNERNQTPEGLPYYSGRLRGNVIADGSGQGSKIMYFGPRKLGRGHLRSHKHGGRTLPSINPSPATRPGDGVIPWSNISFDFGLAVKDEQPGPQGDELFVSFSTTGFERGKNGFGQGRQGRTVAGVNAENPPVNFTPRNVIWNPIKTAITEPSNVRSINGSTVNALSGGISGYSGNGEARPVKYGIGGEDVTLPIGYTDFYPDASTAVVYGTLNSNAGWEFTRTTASVGMSDVIRTHTHDEFDVTFELSGLRPNTTINVNVTAPASNLNLDNTRNQGVLQVNFNTTQPGVTTLYLIRAY
Physico‐chemical
properties
protein length:440 AA
molecular weight: 47133,62470 Da
isoelectric point:5,73013
aromaticity:0,09091
hydropathy:-0,35750

Domains

Domains [InterPro]
IPR037053
4–71
IPR037053
SSF88874
9–75
SSF88874
IPR011083
16–75
IPR011083
AMO43040.1
1 440
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-RIM32
[NCBI] 		1278479 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMO43040.1 [NCBI]
Genbank nucleotide accession
KU594606 [NCBI]
CDS location
range 32638 -> 33960
strand +
CDS
ATGCCATTCTATCAGGAATCTAAAACTGCCAGAGCAGCAGCAATCGGAACTATCATGCCATGGACGGGAAATATCTCGTCCATCCCTGCTGGTTGGATTATTTGTGATGGGTCTTCAATTCCTGCTGCTGACTATCCTCTTCTTGCAAGAGCAATGCAAGATACTTATAATTCGGGAACGACTTCAACATTTGCTGGAACGTTTCCAAACTACAGTGGAAACATTGTTCTTCCGTCCATTTTAAATAGACCAGTCTGTGATATTGAAACTCAATACTTTGGTTCATCATCTCCTATCACAAGTGATGCTGGAGAAGTTCATAGAAATAATATTGCTGCTACTGAAATTACCCCTTACATTGGTCCAAATACAGACAATGGTATTAATACCACCTGGAATGATGTATCAACTGATGTAATTTTTACTTTAAATGAAAGAAATCAAACCCCAGAAGGTCTTCCATATTATAGTGGAAGACTGAGAGGTAATGTTATTGCAGATGGTTCTGGGCAAGGATCAAAAATTATGTATTTTGGTCCAAGAAAATTAGGTAGAGGACATTTAAGAAGTCATAAACATGGCGGAAGAACACTTCCTTCAATTAATCCATCTCCAGCAACCAGACCAGGAGACGGTGTTATTCCATGGAGTAATATTTCATTTGACTTTGGACTAGCAGTTAAGGACGAACAACCAGGACCTCAGGGTGACGAACTATTTGTATCATTTAGCACTACTGGATTTGAACGTGGAAAGAATGGTTTCGGTCAGGGAAGACAAGGCAGAACGGTTGCTGGTGTTAATGCAGAAAATCCACCTGTTAACTTTACACCAAGAAATGTAATTTGGAATCCAATTAAAACTGCAATTACAGAACCAAGTAATGTTAGATCTATCAATGGTTCAACGGTTAATGCACTTTCTGGTGGTATTTCTGGGTATTCTGGAAACGGTGAAGCAAGACCAGTTAAATATGGTATAGGTGGAGAAGATGTAACGCTTCCTATTGGTTATACAGATTTTTATCCTGATGCGTCAACGGCGGTTGTTTATGGAACATTGAATAGTAATGCTGGATGGGAGTTTACCAGAACAACAGCGTCTGTTGGTATGAGTGATGTTATTAGGACACACACTCATGATGAATTTGATGTTACATTTGAACTTTCTGGATTGAGACCTAACACAACAATTAATGTCAATGTAACTGCTCCTGCATCAAATTTGAATTTAGATAATACAAGAAATCAAGGAGTGTTGCAGGTTAACTTCAATACTACACAACCTGGAGTTACTACACTTTATCTTATAAGAGCTTACTAA

Tertiary structure

PDB ID
e8e18d6125e8f86eab630a1a02544461f13e733c73bcca9488acc45a29413571
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3741
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genomic content and context of auxiliary metabolic genes in marine cyanophages Marston,M.F., Martiny,J.B.H. and Crummett,L.T. 2016-12 — GenBank