Protein

View in Explore
Genbank accession
YP_007673719.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,79
Protein sequence
MAQPPVADLPVAPVRGNDQATFNQRGRDFLSALEPWRVAVNDLTAWTEGEATIIGQVKSDVKTLQSEAEALRDDTQTIKETADSEIGAIVDESQSLVDNTALTNNFVGQWSNQSGSLAVGKSVLHNGVYWIAVVDIADVTASEPAASNGDWAVASERPTSGGDIGDIVFSPLDLEATGSYLLADGRVFLQSARPELFAIYGIGQKPVPTSDVTAAPTLSADGLSVDFDPGDQFMVVLQQNAPYRQIFETTSGSFGSVTSPTPNGSEPDASFAVDDVDGTFLAVVEGSGNVLLLEYNGSDFVLADSSNTMSSPSRVTFDATATYIAVADLDPDYLGIYKRSGSTISKLANPSTLPGNSANDVAFSSDATYLVVAEGFPRHITIYKRSGDTFTKLSAPAQPPDSTQQACAFSPDDELLVTGGGGSETLIVYERSGDTFTKISAVTDYPSLATSLAWRSDGKYLVVGSAQSPHLAIYERDEINNLTKIPDPETVPSGAVNAVALGNSDDLLAVAHDGGDGLIVYEPVYPFDPQTEFRIPNVPNLTQTTINGWAPPQVRPYIRSGV
Physico‐chemical
properties
protein length:562 AA
molecular weight: 59454,80190 Da
isoelectric point:4,15109
aromaticity:0,08007
hydropathy:-0,15160

Domains

Domains [InterPro]
Coil
54–81
Coil IPR015943
SSF75011
244–523
SSF75011
IPR019405
310–489
IPR019405
YP_007673719.1
1 562
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Salicola phage CGphi29
[NCBI] 		754067 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salicola
[NCBI] 		332339 Bacteria > Proteobacteria > Gammaproteobacteria > Oceanospirillales > Halomonadaceae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007673719.1 [NCBI]
Genbank nucleotide accession
NC_020844 [NCBI]
CDS location
range 27137 -> 28825
strand +
CDS
ATGGCTCAACCACCAGTAGCAGACCTCCCAGTTGCGCCGGTAAGGGGCAATGATCAGGCGACCTTTAATCAAAGAGGGCGCGACTTTCTTTCGGCTCTTGAGCCCTGGCGAGTTGCCGTTAATGACCTCACCGCGTGGACAGAAGGTGAAGCCACGATCATCGGGCAAGTCAAGTCCGATGTGAAAACTCTGCAATCCGAAGCCGAGGCTCTGCGAGATGACACGCAAACGATCAAAGAAACTGCCGATAGCGAAATCGGCGCGATTGTAGACGAGTCGCAATCACTTGTTGATAACACGGCACTGACAAACAACTTTGTCGGCCAATGGAGCAATCAAAGCGGAAGCCTGGCTGTCGGCAAGAGTGTGCTACATAACGGCGTCTACTGGATTGCTGTTGTCGATATTGCCGACGTTACCGCGAGCGAGCCAGCGGCTAGTAATGGTGATTGGGCTGTTGCGTCTGAGCGCCCGACCAGTGGCGGGGATATTGGTGATATTGTTTTTTCACCGCTGGACCTGGAGGCCACGGGTAGCTATTTGTTGGCGGACGGCCGCGTGTTCCTGCAGTCAGCCCGCCCCGAGCTGTTCGCAATCTACGGCATTGGCCAAAAGCCGGTGCCGACGTCTGATGTTACCGCCGCGCCTACGCTCTCTGCTGACGGACTCTCGGTTGACTTTGATCCTGGCGACCAGTTCATGGTCGTGCTTCAGCAGAACGCCCCTTATCGCCAAATTTTTGAGACGACAAGCGGGTCATTTGGGTCGGTCACCTCCCCGACGCCGAACGGCTCAGAGCCTGATGCCTCATTTGCCGTTGATGATGTCGATGGCACTTTTTTGGCAGTTGTGGAGGGGTCTGGCAACGTCCTCTTGCTTGAGTACAACGGCTCTGATTTCGTCCTTGCCGACTCGTCAAACACGATGAGTTCCCCGAGCCGTGTCACATTTGACGCCACGGCGACATACATCGCTGTAGCAGACCTAGACCCTGACTATCTCGGAATCTATAAGCGCAGCGGGTCGACCATCAGCAAGCTCGCAAACCCCTCAACTTTGCCGGGCAATTCAGCAAACGATGTCGCGTTTTCCTCCGATGCCACCTATCTCGTGGTCGCAGAGGGATTCCCTCGACACATCACGATCTATAAGCGCAGCGGGGACACGTTCACAAAGCTATCTGCCCCTGCCCAGCCTCCAGATTCGACGCAGCAAGCGTGTGCGTTCAGCCCTGATGACGAATTGCTTGTGACTGGCGGTGGCGGCTCTGAGACGCTTATCGTTTACGAGCGCTCCGGGGACACGTTCACCAAGATATCGGCGGTCACTGATTATCCGTCACTGGCCACGAGCCTTGCATGGAGGTCAGACGGTAAATACTTGGTCGTAGGATCCGCACAAAGCCCTCATCTTGCGATCTATGAGCGTGACGAAATCAATAACCTGACCAAGATCCCGGATCCTGAGACGGTTCCATCCGGGGCTGTTAATGCCGTCGCCCTTGGGAATTCTGATGATCTGCTTGCGGTCGCGCATGATGGCGGTGACGGCTTGATCGTCTACGAGCCGGTCTACCCGTTCGACCCGCAGACCGAGTTCCGAATCCCGAACGTGCCCAATCTGACCCAGACAACAATCAACGGCTGGGCACCGCCTCAAGTGCGCCCCTATATCCGGTCAGGAGTGTGA

Tertiary structure

PDB ID
83ea92fd1a6690aaee924929e093b5e65a3369445ed7698e58605f6d544fc20f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8221
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Salicola phage CGphi29 Henn,M.R., Dillon,J., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank