Protein

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Genbank accession
YP_009798364.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
Protein sequence
MATLAKQTVETGNRIYIMIKNEVIGRAQSLTGDRSFGTQGVYELGSIMPHEHVFLKYTGTVSVERYRLRTGNMSDKKIAALGEDVLKIDILDINVKDNQTGALIICYRGCSINTYSETYRANDITGESAQFYYLTSSNLQNGGYSTSQFNTASGIS
Physico‐chemical
properties
protein length:156 AA
molecular weight: 17217,15130 Da
isoelectric point:6,72209
aromaticity:0,08974
hydropathy:-0,29231

Domains

View on InterPro
Domain architecture
YP_009798364.1
1 156 aa
TAS 5–137 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009798364.1
1 156 aa
Domain Start End Length (AA) Confidence
N-terminal 1 82 82 0,4659
Central domain 83 145 64 0,1373
C-terminal 146 156 10 0,9948
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Lactobacillus phage Semele [NCBI] · taxon 2079433
Uroviricota Caudoviricetes Herelleviridae Harbinvirus semele
Host No host information

Coding sequence (CDS)

Genbank protein accession
YP_009798364.1 [NCBI]
Genbank nucleotide accession
NC_047926 [NCBI]
CDS location
range 16791 -> 17261
strand +
CDS
ATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAACCGTATTTATATCATGATTAAGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCCAAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACGGGTACTGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTGATAAGAAGATTGCTGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATATTAATGTTAAGGATAACCAAACTGGTGCCTTAATCATCTGTTATCGTGGATGCTCAATTAACACTTACTCAGAAACTTATCGGGCTAACGATATTACTGGTGAATCTGCACAATTCTACTACTTGACTTCAAGTAACTTACAGAATGGCGGATACTCAACTTCTCAATTCAATACCGCTTCTGGTATTTCTTAA

Genome Context

Tertiary structure

YP_009798364.1
ESMFold structure
Source ESMFold
pLDDT 69.0
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Lactobacillus phages that infect wine-derived L. plantarum strains Kyrkou,I. and Hestbjerg Hansen,L. 2018-12-03 — GenBank