Phage RBP Database

Genbank accession

YAA52907.1 [GenBank]

Protein name

tail spike protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,90

TSP

Evidence RBPdetect2

Probability 0,55

Protein sequence

MNAHTPFDANQDWSNPYCQNRSNDPMVDALLGNAYHVVRTVYCNLGNLKLLYDFLNQYGMVIGVQSEAELKALTSDAKYARIYGFSRTGDRQVTDYLYVDGDRTGIIPDDPEATGSWITVATSGSNGGGGGTSSGGGAYIPWVYANGSATGGETTINVPDDTLGVPFIIVNGDMQYVGRGFEFNVENQSVTLAQPLEEGDEVVFLLTGTPAVPDNPNVSDWIQINWLYNGGYASGGEQVIAIPYTFESVPAIYKNGERYYAGLADKSYTVDAANQRIFLTEPLATNDRLIVTIGGESTTLVMSDRTIQEVARSANVHEDDVILSTNTTQYLNGKRVIYDVVEHKIYGLPTLPANVYINTVSNGQLTYSPGSITVDLLPVSNEYTDALRSELAAETGSELVTYKTALSGAIARSIHERLSDYVSVLDFGAKGDGITDDTQAFAAAASASPQGAYVPSGTYLLPEDINGRFYGQGKRIKAVGDSGIPFTNVAQSHNNLILGYDAAKDYTDAGKGDQLVLLGPSSGRNLTTGTNSIVVGVGGLSGDTLEDALTDTSPFTGTEVISIGINALKKTTTGNNMIGIGRDALNECKDGRFNVAIGMSALQQLHSGEANVAIGRSAGMRTGIYTNEEGVRLGYTTCSGNTLIGNAAGRELKSGNHNTAVGNGALRGVSSESNSFTGTMEGSFNTAVGVDTLTSFTSGELNTIVGARAGRKLPSGSGNIFIGADAGAGIDSEKSNTLIINNHTGLPFIEGTMGGAQSENNYLRIDGSVAPQIDNTRTCGQSSRRWQTVFATNGVIQTSDGRCKDVYEITKAEYHAGLELSSSMIKFKWTDTEADKYHFGCLAQEVMLIMEKHGLNTLDYSLVTYDAEADMYGVNYAELSCFCIAALSQRVLGSA

Physico‐chemical properties

protein length:	895 AA
molecular weight:	95147,32700 Da
isoelectric point:	4,64121
aromaticity:	0,08156
hydropathy:	-0,20358

Domain architecture

YAA52907.1

1 895 aa

ATT 295–382 · STR 383–735 · RBD 785–883 · CHP 884–895

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:3.30.2020.50
ATT

G3DSA:3.30.2020.50 IPR012334 IPR036388

IPR011050
STR

IPR011050 IPR030392

IPR011050
STR

IPR011050

IPR024535
ENZ

IPR024535

YAA52907.1

1895 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0265
STR

DC_0265

YAA52907.1

1895 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:3.30.2020.50	ATT	G3DSA:3.30.2020.50	295	382	Merged direct domain	G3DSA:3.30.2020.50	N-terminal	Low	Positional only	289 proteins / 289 hits
IPR012334	STR	IPR012334	383	695	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	417	483	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR011050	STR	IPR011050	419	735	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR024535	ENZ	DC_0410	421	517	InterPro cluster	Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain	Central	High	Text match	420 proteins / 426 hits
IPR036388	RBD	IPR036388	785	883	Merged direct domain	Winged helix-like DNA-binding domain superfamily	C-terminal	Low	Positional only	96 proteins / 96 hits
IPR030392	CHP	DC_0088	799	895	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YAA52907.1

1 895 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	437	437	0,9662
Central domain	438	739	303	0,9841
C-terminal	740	895	155	0,9600

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Escherichia phage 10GB [NCBI] · taxon 3446674

Viruses

Host

Escherichia coli [NCBI] · taxon 562

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YAA52907.1 [NCBI]

Genbank nucleotide accession

PV805630.1 [NCBI]

CDS location

range 63315 -> 66002
strand -

CDS

ATGAACGCACATACCCCCTTCGATGCAAATCAGGATTGGTCCAATCCTTACTGCCAGAATAGATCCAACGACCCAATGGTAGATGCACTACTTGGTAATGCTTACCACGTAGTCCGAACTGTGTATTGTAATTTGGGTAACCTGAAACTCCTGTATGATTTTCTGAATCAATATGGAATGGTTATTGGCGTACAATCTGAGGCTGAGCTTAAGGCTCTTACTTCAGATGCTAAGTACGCCCGTATCTACGGATTCTCCCGTACAGGAGACCGTCAGGTTACTGACTATTTGTACGTAGATGGTGATCGTACCGGCATCATTCCGGATGATCCAGAAGCAACTGGTTCATGGATTACTGTTGCTACTTCTGGTTCTAATGGTGGTGGTGGTGGTACTTCCTCTGGCGGGGGTGCTTATATTCCCTGGGTATATGCAAACGGTTCCGCTACTGGTGGGGAAACCACAATCAACGTACCGGATGATACGTTAGGCGTACCTTTCATTATTGTTAATGGTGACATGCAGTATGTAGGCCGTGGCTTTGAATTTAATGTAGAGAATCAGTCCGTGACTCTGGCTCAGCCTCTGGAAGAAGGTGATGAAGTAGTATTTCTTCTAACTGGAACTCCTGCTGTACCGGATAACCCTAACGTTAGCGACTGGATTCAGATTAACTGGCTATACAACGGTGGGTATGCTTCGGGTGGTGAGCAAGTAATTGCTATTCCGTATACGTTTGAATCTGTGCCAGCCATCTACAAGAATGGCGAACGCTACTATGCAGGTTTGGCTGATAAATCCTATACAGTCGATGCAGCTAACCAGCGTATCTTTTTAACAGAGCCTCTGGCTACCAACGATCGTTTGATTGTAACTATTGGCGGTGAGTCTACTACCCTGGTTATGTCTGACCGTACCATTCAGGAAGTAGCACGTTCAGCTAATGTGCATGAGGATGATGTTATTTTGAGTACTAATACTACTCAGTATCTGAATGGGAAGAGGGTTATTTATGATGTAGTTGAGCATAAGATTTATGGTCTTCCTACTCTTCCTGCTAATGTTTATATCAACACTGTTTCCAATGGGCAGTTAACTTATTCCCCAGGTAGCATTACAGTTGATTTGCTGCCTGTATCAAATGAATACACTGATGCGTTACGCTCGGAACTAGCTGCAGAAACTGGTTCAGAATTAGTTACCTATAAAACTGCATTAAGCGGTGCTATTGCACGTAGTATCCATGAACGGCTTTCTGATTATGTAAGCGTCCTTGATTTTGGTGCTAAAGGTGATGGTATTACAGACGACACACAAGCCTTTGCTGCTGCCGCATCTGCTTCACCTCAAGGTGCTTATGTTCCGTCAGGCACGTATTTATTACCAGAAGATATTAATGGCAGATTCTATGGTCAGGGTAAGCGTATCAAGGCTGTAGGCGATAGTGGTATTCCTTTCACTAACGTAGCCCAATCCCATAACAACCTCATCTTAGGTTATGATGCTGCAAAAGATTACACGGACGCAGGAAAAGGCGACCAATTAGTATTACTTGGCCCAAGCTCAGGTCGCAACCTTACCACAGGTACTAACTCTATCGTAGTTGGTGTGGGTGGTTTATCGGGTGATACCCTAGAAGATGCACTGACAGACACGTCTCCTTTCACTGGTACAGAGGTTATTAGCATCGGTATCAATGCTCTTAAGAAAACTACCACTGGCAACAACATGATTGGTATCGGTCGTGATGCCCTGAATGAGTGTAAGGATGGACGATTCAACGTAGCTATAGGTATGTCTGCTTTGCAACAGCTACATTCTGGTGAGGCTAATGTAGCAATAGGTCGTTCGGCAGGTATGCGTACTGGCATCTACACTAATGAAGAGGGTGTACGCTTAGGTTATACAACATGTAGCGGTAATACGTTAATAGGTAACGCGGCTGGTCGTGAATTGAAGTCAGGCAACCATAATACAGCCGTAGGTAATGGTGCTTTACGCGGTGTAAGCTCAGAGAGTAACAGTTTTACTGGTACGATGGAAGGTAGCTTTAACACGGCTGTTGGTGTTGACACCTTAACCTCTTTTACCTCTGGTGAGTTGAATACTATTGTTGGAGCAAGGGCAGGACGTAAGTTACCTAGCGGATCTGGTAACATCTTCATTGGTGCGGATGCAGGTGCAGGTATTGATAGTGAGAAGTCTAATACGCTAATTATTAACAATCACACTGGCTTGCCTTTCATAGAAGGTACTATGGGTGGTGCTCAGAGTGAGAATAACTATCTCCGTATAGATGGGAGTGTAGCACCTCAGATTGATAACACAAGAACCTGTGGTCAATCTAGCCGTAGATGGCAGACAGTCTTTGCTACAAATGGTGTTATTCAGACGTCTGATGGGCGATGCAAGGATGTATACGAGATTACCAAGGCTGAATACCATGCTGGCCTAGAGTTGTCCTCTAGCATGATTAAGTTCAAGTGGACAGATACGGAAGCAGACAAGTATCACTTCGGTTGTCTGGCGCAAGAAGTCATGCTAATTATGGAGAAACATGGGTTAAATACTCTGGATTACTCTCTCGTTACCTATGATGCTGAAGCAGATATGTATGGTGTTAACTATGCAGAACTGTCTTGCTTCTGTATCGCAGCATTATCCCAACGTGTATTAGGCAGTGCGTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)