Phage RBP Database

Genbank accession

XGD05842.1 [GenBank]

Protein name

tail protein

RBP type

TSP

Evidence RBPdetect

Probability 0,87

Protein sequence

MTITNKDYDTWESKMYGLPYAVYSYYIDSTVAGENTAVIGASGDNVFSVVYTPFLDIADLELEEIPYDNKRFGNISEIRPEIKANPHVFRIKKLLKGSKFVGEFETYKVKKSVGGKRNWRNESKLYNYPYTYLMLSDGINDPMILKPQFCSIPSCSVGIKLSVSDRCSYGIFIQTYKGDTDGMTEALVSNDALEMPCTSSAYANWVATSKNQTAQSIQNTVNQTILNNKIAKNNMNLGIANSVVGGVASAFTGNVGGVIDSVFGGVGSYMDKKHTNMQSQLTRESAISTALATANDMRSTPNTLLSQGSNIIYGLRNGGQELRLYRYGLTERYYEKIGDYFAQFGYKQNKMMKININSRYYYNYIKTIGINIKTNKIPNNYLNILKGIFDNGTTIWHIDNDGVEIGNYSMDNREV

Physico‐chemical properties

protein length:	415 AA
molecular weight:	46488,01760 Da
isoelectric point:	8,54420
aromaticity:	0,11325
hydropathy:	-0,38386

Domain architecture

XGD05842.1

1 415 aa

STR 104–413 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR048710
STR

IPR048710

IPR048710
STR

IPR048710

XGD05842.1

1415 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0687
ATT

DC_0687

XGD05842.1

1415 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR048710	STR	DC_0840	104	413	InterPro cluster	Tail knob protein gp9, C-terminal domain	C-terminal	Low	Positional only	105 proteins / 105 hits
IPR048710	STR	DC_0840	120	412	InterPro cluster	Tail knob protein gp9, C-terminal domain	C-terminal	Low	Positional only	105 proteins / 105 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XGD05842.1

1 415 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	10	10	0,1259
Central domain	11	204	195	0,8107
C-terminal	205	415	210	0,4148

Note: Constraints were applied during segmentation.
Sequence started with non-N-terminal domain|N-terminal too short, forced to 10 residues

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Clostridium phage CpP_VarHS [NCBI] · taxon 3455035

No lineage information

Host

Clostridium perfringens [NCBI] · taxon 1502

cellular organisms Bacteria Bacillati Bacillota Clostridia Eubacteriales

Genbank protein accession

XGD05842.1 [NCBI]

Genbank nucleotide accession

PP973485 [NCBI]

CDS location

range 9603 -> 10850
strand +

CDS

ATGACAATAACTAATAAAGATTATGATACGTGGGAATCCAAAATGTACGGGTTACCATATGCCGTATATAGCTATTATATTGACTCTACCGTGGCAGGTGAAAACACGGCAGTTATAGGTGCAAGTGGTGATAATGTTTTTAGTGTTGTTTACACACCTTTTTTAGATATTGCTGATTTAGAACTAGAAGAAATCCCATATGACAATAAAAGATTTGGTAATATTTCAGAAATTAGACCCGAAATAAAAGCAAATCCTCACGTTTTCAGAATTAAAAAATTATTAAAAGGTTCTAAATTTGTAGGTGAGTTTGAAACTTACAAAGTAAAAAAGAGTGTGGGTGGTAAAAGAAACTGGAGAAATGAAAGTAAGTTATATAATTATCCATACACTTATTTAATGCTAAGTGATGGTATAAATGACCCTATGATTTTAAAGCCTCAATTTTGTTCAATTCCTAGTTGTTCAGTTGGTATAAAATTATCCGTTTCAGACAGGTGTTCCTATGGAATATTTATTCAAACATATAAAGGTGATACAGATGGAATGACGGAGGCTTTAGTGTCAAATGATGCACTTGAAATGCCTTGCACTAGTTCAGCATATGCAAATTGGGTTGCAACTTCAAAAAATCAGACAGCACAATCAATTCAAAATACTGTAAATCAAACAATTTTAAATAATAAAATAGCAAAAAATAACATGAATTTAGGTATTGCAAATAGTGTTGTTGGTGGTGTTGCTAGTGCGTTTACAGGTAATGTTGGTGGTGTAATAGATAGTGTCTTTGGTGGTGTTGGCTCATATATGGATAAAAAACATACAAATATGCAGAGTCAATTAACTAGAGAATCAGCTATCAGTACAGCTTTAGCTACAGCAAACGACATGAGGTCAACGCCTAATACTTTATTAAGTCAAGGGTCAAATATAATTTATGGGTTGCGTAATGGTGGTCAAGAGTTAAGACTTTACCGTTATGGTTTAACAGAAAGATACTATGAAAAGATTGGCGATTATTTTGCCCAATTTGGATATAAGCAAAATAAAATGATGAAAATTAATATTAATTCAAGATATTATTATAACTATATAAAAACAATAGGAATTAATATAAAAACTAATAAAATTCCTAATAATTACTTAAATATCCTCAAGGGTATTTTTGACAATGGTACTACAATATGGCATATTGATAATGACGGTGTCGAAATTGGTAATTATTCTATGGATAACAGGGAGGTATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)