Phage RBP Database

Genbank accession

XLL20565.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,82

Protein sequence

MTNTTDKSILTAAGKALLAQLNAEEKPLVIDKMIFANVPNRPEFPQPDDVVPNDDVVHEAAVEQRGRLSVDSVIYSTTLTSQEGPFEFNWTGAYCSEYGVLVTIDHHALTPKTVDEPGVAGNTLVRSVVLEYKDIAEITNITVDASSWQYNATPRMKKMDDDVAQAIIDQNGKDWFIEDGFLVTPQASAFNIKAGAGYVSGNRVMLEFDRNVQVPNKPSFIYVDAHREGTPTGEQVTLFDFVVTAEEKDDYTDANGVKHFVCKVAQVLADGSVSDLRPEGESASRNWVEKEIPINKFPVIGEAGRSSTQRFSDYLNIKDFGAVPGADITLALSEAINKKVRKLRITDSFVFNGDISTPKNMTLIFEDGGEISYEAGCNLIINGRVVSDSLPFKDGGGTIRVEGYDIIVGSTFDCDVKTPNEALALVPGRQWQRFNIKISKGTYDEDVLCANKWAASATIGQVIGERTGVYITSLSGNADDVHIKSWLCVSSGGGSFTPMIAEVTIDDHNTKTNETCSCEWYGCPSGAVLGVKFRSGNNSDKAILSYQSNVSVESCDFGDRLYNYLMYTKHGGVIQENSNTRLNVGTSSVGVAKKSITKPLGGPIFGSDFSQMSSDDYQRHSYGGAGVSFTYSRDERTIYGPALLADVVSAYHSYLTSISDYSNNVINGATVDSDPIYGMLIQTGTQPSAKAEAWIRRQVTISRQEINMRQQLLVGARIESLGDLGQFDVSIGHGVNQPKLSIRFNKQGVFGVYRDQDGAESLVTIMSNISQVIKTDLIIDLNVIRGDTNQEGVVQFRVRTETFSFYKQTKIFSNSYKTDFLWHVSASDNGQNTKVCVGEIRLFRE

Physico‐chemical properties

protein length:	845 AA
molecular weight:	92652,59230 Da
isoelectric point:	5,00424
aromaticity:	0,08876
hydropathy:	-0,26947

Domain architecture

XLL20565.1

1 845 aa

ATT 8–146 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR022225
ATT

IPR022225

XLL20565.1

1845 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1549
ATT

DC_1549 DC_2185

DC_2249
ATT

DC_2249

XLL20565.1

1845 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR022225	ATT	DC_0271	8	146	InterPro cluster	Phage tail fibre protein, N-terminal domain	Central	Medium	Text match	271 proteins / 271 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XLL20565.1

1 845 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	329	329	0,9971
Central domain	330	604	276	0,8589
C-terminal	605	845	240	0,9340

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Vibrio phage 10N.286.54.E4_PE001 [NCBI] · taxon 3385330

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Vibrio cyclitrophicus [NCBI] · taxon 47951

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales

Genbank protein accession

XLL20565.1 [NCBI]

Genbank nucleotide accession

PQ189350.1 [NCBI]

CDS location

range 5025 -> 7562
strand -

CDS

ATGACAAACACCACTGATAAGTCGATTTTGACCGCCGCAGGTAAGGCGTTATTGGCTCAGCTTAATGCAGAAGAAAAGCCGCTTGTAATCGACAAGATGATTTTTGCTAACGTACCGAACCGCCCCGAGTTCCCTCAGCCTGATGATGTGGTACCAAATGATGATGTGGTTCATGAAGCTGCGGTAGAGCAACGCGGTCGCCTTTCGGTTGATTCGGTTATTTACAGCACAACGCTCACCAGTCAAGAAGGCCCGTTCGAATTTAACTGGACAGGTGCTTACTGTTCAGAATATGGCGTGTTGGTCACCATTGACCACCACGCGCTAACACCTAAGACGGTAGACGAACCAGGTGTTGCAGGTAATACCTTGGTGCGTTCTGTCGTACTTGAGTACAAAGACATTGCTGAAATTACCAACATCACGGTAGACGCATCATCGTGGCAGTACAACGCAACGCCACGTATGAAGAAAATGGACGACGATGTGGCCCAAGCCATTATCGACCAGAACGGCAAAGATTGGTTTATCGAAGACGGTTTCTTGGTCACGCCTCAAGCGAGCGCATTCAACATCAAAGCGGGTGCCGGCTATGTGTCGGGCAATCGTGTCATGCTCGAATTTGATCGTAATGTTCAAGTTCCTAACAAGCCATCATTCATCTATGTTGACGCACACCGCGAAGGAACGCCAACAGGTGAGCAAGTCACCTTGTTTGATTTTGTGGTTACTGCAGAAGAGAAAGACGACTACACCGATGCAAATGGAGTAAAACACTTTGTTTGCAAGGTTGCTCAAGTGTTGGCTGATGGTTCGGTGAGTGATTTAAGACCAGAGGGAGAGAGCGCTAGCCGAAATTGGGTAGAAAAAGAAATACCAATTAATAAATTTCCAGTTATTGGGGAGGCAGGACGTTCGTCAACACAACGATTTTCTGATTATTTGAATATTAAAGATTTTGGTGCAGTGCCAGGGGCGGACATTACATTAGCACTATCAGAAGCTATTAATAAAAAAGTAAGAAAATTGCGAATCACAGACTCGTTTGTATTTAATGGTGACATTTCCACTCCTAAAAATATGACCCTGATATTTGAGGATGGTGGAGAAATCAGTTATGAAGCTGGATGTAATTTAATTATAAACGGTCGGGTGGTTTCTGATTCTCTACCATTTAAGGATGGAGGAGGAACCATCAGAGTTGAAGGTTATGACATCATTGTTGGTTCGACTTTTGATTGTGATGTAAAAACGCCGAATGAAGCGTTAGCCTTAGTGCCAGGTAGACAATGGCAGAGATTTAATATCAAGATATCTAAGGGTACTTATGACGAAGATGTTCTTTGCGCAAATAAATGGGCAGCGAGTGCGACTATAGGTCAAGTTATTGGTGAGCGGACAGGTGTTTATATTACGTCACTCTCAGGCAATGCTGATGATGTACATATTAAATCGTGGTTATGTGTATCGTCAGGCGGTGGTAGTTTTACGCCAATGATTGCGGAAGTTACGATTGACGATCATAACACTAAGACAAATGAAACATGCTCATGTGAGTGGTACGGTTGTCCGTCAGGTGCTGTACTTGGGGTTAAGTTCCGCAGTGGAAATAATTCAGATAAAGCAATCTTGTCATATCAATCTAATGTATCTGTAGAATCGTGTGATTTCGGTGATAGGCTATATAACTATTTGATGTACACCAAACACGGTGGGGTAATTCAAGAAAACTCAAACACTCGCTTAAATGTCGGCACATCAAGTGTTGGTGTGGCGAAAAAATCCATTACAAAACCGTTAGGTGGTCCAATTTTTGGGTCTGACTTTTCACAGATGAGTAGTGATGATTATCAGCGCCATTCTTATGGTGGCGCAGGTGTCTCATTCACATATAGTCGTGATGAACGTACTATTTATGGTCCCGCATTGCTTGCCGATGTTGTTAGTGCATACCATTCTTATTTGACTTCTATTTCTGATTACTCCAATAACGTAATCAATGGAGCAACAGTGGATTCAGATCCCATTTATGGGATGTTGATTCAAACTGGAACACAGCCGTCGGCGAAGGCTGAAGCATGGATACGCCGACAGGTGACGATCTCTCGACAAGAAATCAATATGCGGCAGCAATTGTTAGTTGGAGCCAGAATAGAATCATTGGGTGATTTAGGGCAGTTTGACGTTTCCATTGGTCATGGGGTTAATCAACCTAAATTATCCATTCGCTTTAATAAGCAAGGTGTTTTTGGTGTTTATCGAGATCAAGATGGCGCAGAATCTCTGGTAACGATAATGTCAAATATTAGTCAGGTAATAAAAACAGATCTCATTATTGACCTGAATGTGATTAGAGGTGATACAAACCAGGAGGGTGTTGTTCAATTCAGGGTAAGAACAGAAACATTTAGTTTTTATAAGCAGACTAAAATATTTAGCAACTCATATAAGACTGATTTTTTATGGCATGTTTCAGCCTCAGATAATGGACAAAATACAAAAGTCTGTGTTGGGGAGATAAGATTATTTAGAGAATAG

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)