Phage RBP Database

Genbank accession

YP_011891975.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect

Probability 0,74

TF

Evidence RBPdetect2

Probability 0,90

Protein sequence

MALRIDKINLKATDVAALPVYGLITTGTNLNTLDGSVYGKYWQSENANSPTSLNYPVAAAGTLLVLKNNASNLATSCTQIYLPYNRNEIYSRSFYNSWTAWSRFASIDMDGANSTIKSLTGLTTALSIEQGGTGVVSKEAFRQSYNVPTKDESLLTENNLSDLADRAAAWLNVRPIGSTPLAGDPVNDYDAVTKRWVENKINTGTVGPTMNGVMNYGVGDFHLRDSRAYIQPYEVVSDGQLLNRADWPELWAYAQMVGAIDDSKWLADKFQRGKYSSGNGTTTFRVPDKNGVQEGSIRALYGRGDGGNSGANGQLFESAAPNITAAVPSYSSTSYAQVFGSTASGAFFVDNAIFPNGDGDAIPSTGNIALSGRYNTLNFDASRSSPIYGTSNDEILTRNFVGVWVIRASGGFVAANTSWSVKNADSSAPPQNTSVRGGEVVSEYSNPAGKRFARLYSDTIWGSSGAAIIEAEGSAKHSYKFYEDGTADFRQSGKINTFRMNTPMGTWNGITDAGIDNLTTNGMDRVAIASGSDTLVRGYSIGGYRPNGYPTKIGLHMYIPGNNAFGTACMVVGGDNGKFCRYFFDIDGQIYGSTDYGNFSYTKNGTSDSRVKHGIAPVGVDKSYSNIKGLEFVEFIYDNDEQNRVRHGVIAQQAEVVEPLYVKTRKYVGNNPGEVVEQKELDTTPMLLDTMHVVQVLMQRIEAMEAEIAELKASK

Physico‐chemical properties

protein length:	715 AA
molecular weight:	77362,92560 Da
isoelectric point:	5,36108
aromaticity:	0,10210
hydropathy:	-0,35497

Domain architecture

YP_011891975.1

1 715 aa

STR 22–105 · CHP 607–708 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

cd19958
STR

cd19958 IPR030392 Coil

IPR030392
CHP

IPR030392

YP_011891975.1

1715 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1909
STR

DC_1909 DC_1985

DC_1514
STR

DC_1514

YP_011891975.1

1715 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
cd19958	STR	DC_0464	22	105	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
IPR030392	CHP	DC_0088	607	659	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits
IPR030392	CHP	DC_0088	607	708	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits
Coil	Unmapped	-	694	714	Coils	Coil	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_011891975.1

1 715 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	466	466	0,3791
Central domain	467	665	200	0,2435
C-terminal	666	715	49	0,9916

Note: Constraints were applied during segmentation.
Fixed 269 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Escherichia phage IME178 [NCBI] · taxon 2860371

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Escherichia coli [NCBI] · taxon 562

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YP_011891975.1 [NCBI]

Genbank nucleotide accession

NC_104190.1 [NCBI]

CDS location

range 68230 -> 70377
strand -

CDS

ATGGCTCTTAGAATTGATAAAATTAACTTAAAGGCTACTGATGTAGCCGCTTTACCTGTATATGGTTTAATTACTACAGGAACAAATTTAAATACACTTGATGGGAGTGTGTATGGAAAGTATTGGCAATCTGAAAATGCTAACTCTCCTACTTCTCTTAACTATCCTGTTGCGGCTGCAGGTACATTACTAGTTTTAAAAAATAATGCAAGCAATTTAGCGACTTCTTGTACTCAAATTTACTTACCTTATAATCGTAATGAGATATATAGTAGATCTTTTTACAATTCATGGACTGCATGGTCAAGATTTGCTAGTATAGACATGGATGGTGCCAACTCAACTATTAAATCTTTAACAGGTTTAACCACTGCACTTTCTATAGAACAAGGAGGTACTGGAGTAGTATCAAAAGAAGCTTTTAGACAAAGTTATAATGTGCCAACAAAAGACGAAAGCCTATTGACTGAAAATAATTTATCAGATTTAGCAGATCGCGCAGCTGCGTGGCTAAATGTGCGACCTATTGGATCTACTCCCCTTGCGGGAGACCCCGTTAATGATTATGATGCTGTAACTAAGCGTTGGGTGGAGAACAAAATTAATACTGGCACAGTAGGACCCACAATGAATGGTGTCATGAACTATGGTGTAGGTGATTTTCACCTTCGCGATAGTCGTGCGTATATTCAACCTTATGAGGTAGTTTCTGATGGGCAGCTTCTTAACAGGGCTGACTGGCCGGAGCTTTGGGCTTACGCTCAAATGGTGGGTGCTATAGATGATTCTAAATGGCTGGCTGATAAATTTCAGCGCGGTAAGTACTCATCAGGAAATGGGACAACAACTTTTCGTGTTCCAGATAAGAATGGGGTGCAGGAGGGATCAATACGCGCTCTTTATGGTCGTGGAGATGGTGGAAATAGTGGTGCAAATGGCCAGCTATTTGAATCTGCTGCACCTAATATTACTGCTGCTGTTCCTAGCTACTCAAGTACTAGCTACGCCCAGGTATTTGGCTCTACTGCTAGTGGTGCATTCTTTGTTGATAATGCGATTTTTCCTAATGGTGATGGGGATGCGATTCCAAGTACAGGAAATATTGCATTATCTGGGCGCTATAATACACTAAATTTTGACGCCTCACGTTCAAGTCCAATTTACGGAACATCAAATGATGAAATTCTTACACGAAACTTTGTCGGTGTGTGGGTAATCCGTGCGTCGGGTGGTTTCGTTGCAGCAAATACATCATGGAGTGTTAAGAATGCAGATAGTAGCGCACCTCCGCAGAATACCTCCGTTCGTGGTGGTGAAGTAGTATCTGAATATTCCAACCCAGCAGGTAAGCGGTTTGCTCGTCTATACTCTGATACTATCTGGGGCTCCTCGGGGGCTGCGATTATTGAGGCTGAGGGCTCCGCTAAGCACTCTTATAAGTTTTACGAAGATGGTACGGCAGACTTCCGCCAATCGGGTAAGATTAATACCTTCCGTATGAATACGCCTATGGGCACATGGAATGGCATTACGGATGCTGGAATAGACAACCTGACTACCAACGGCATGGATCGGGTAGCCATTGCTAGCGGTTCAGACACACTAGTTCGTGGTTATTCTATTGGTGGATATCGCCCCAACGGATATCCCACCAAGATAGGGCTCCATATGTACATACCAGGTAATAATGCCTTCGGTACAGCTTGCATGGTGGTCGGTGGAGATAATGGAAAATTCTGTCGTTACTTTTTTGATATTGATGGTCAAATATATGGTTCGACTGATTACGGGAACTTTAGTTATACAAAAAATGGTACTTCTGACTCACGTGTAAAACACGGCATCGCCCCTGTTGGAGTTGACAAATCATACTCTAATATTAAAGGGCTGGAATTTGTAGAGTTCATTTATGACAATGACGAACAAAATCGAGTTCGGCATGGCGTGATTGCACAGCAAGCAGAGGTTGTTGAGCCTTTATATGTTAAGACGCGCAAATATGTTGGCAATAATCCAGGAGAGGTTGTGGAGCAGAAGGAGCTGGACACCACGCCGATGCTTCTGGATACCATGCACGTTGTGCAGGTATTAATGCAGAGGATCGAAGCGATGGAAGCTGAGATTGCGGAATTAAAGGCAAGTAAGTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)