Phage RBP Database

Genbank accession

YP_004957630.1 [GenBank]

Protein name

tail fiber protein and host specificity

RBP type

TF

Evidence Phold

Probability 1,00

Protein sequence

MGSMSKKQNFNNKELNTTSMQAALQCEQLALNEKAQDLQSEQVRAKMQIDFLSMQANLQNAKAETLNKLIQCQAMLKSLKDNAMINRANAFVSLLQVQANAANGITAFNFEAAFKIIAQIGSEYNQITLNYGKVSVQEKEQTNELKTLLNELSKELEKLNEQSEVNSIQVFSDKLEVLKDAPTRLWGFSTLSNATEGFYSADNEQLASGSVFLFRSDRVGKHTITFRASNTKTNLAKNITISVIANKLKERTN

Physico‐chemical properties

protein length:	253 AA
molecular weight:	28242,71850 Da
isoelectric point:	8,74135
aromaticity:	0,06324
hydropathy:	-0,42411

Domain architecture

YP_004957630.1

1 253 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

Coil
Unmapped

Coil Coil

YP_004957630.1

1253 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0626
STR

DC_0626

YP_004957630.1

1253 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
Coil	Unmapped	-	21	41	Coils	Coil	-	-	-	-
Coil	Unmapped	-	135	169	Coils	Coil	-	-	-	-

Proteins with similar domain architecture

Phage

Helicobacter phage phiHP33 [NCBI] · taxon 1069378

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Helicobacter pylori B45 [NCBI] · taxon 999629

Bacteria Proteobacteria delta/epsilon subdivisions Epsilonproteobacteria Campylobacterales Helicobacteraceae

Genbank protein accession

YP_004957630.1 [NCBI]

Genbank nucleotide accession

NC_016568.1 [NCBI]

CDS location

range 20373 -> 21134
strand +

CDS

ATGGGGAGTATGTCAAAGAAGCAAAATTTTAATAACAAAGAACTCAACACCACGAGCATGCAAGCAGCCTTGCAGTGCGAGCAGTTAGCTTTAAATGAAAAAGCGCAAGATTTGCAAAGCGAGCAAGTGAGAGCTAAAATGCAAATAGATTTTTTAAGTATGCAAGCGAATTTGCAAAACGCCAAAGCCGAAACCTTAAACAAACTCATTCAATGCCAAGCGATGCTAAAAAGCCTAAAAGATAACGCCATGATTAACCGAGCCAACGCATTTGTAAGCCTTTTGCAAGTGCAAGCGAATGCGGCTAATGGGATCACAGCGTTCAATTTTGAAGCGGCGTTTAAAATCATTGCTCAGATCGGATCTGAATACAATCAAATCACCTTAAACTATGGGAAAGTGAGCGTGCAAGAAAAAGAACAAACGAACGAACTCAAAACACTATTAAACGAGTTGAGTAAGGAATTAGAAAAACTAAACGAACAGAGCGAGGTTAATTCTATACAGGTTTTTAGCGATAAGTTAGAAGTGTTGAAAGATGCGCCTACTAGGCTATGGGGGTTTAGCACTTTATCTAACGCAACCGAAGGATTTTACAGTGCTGATAACGAGCAATTAGCGAGCGGTAGCGTGTTTTTGTTTAGGAGCGATAGAGTGGGAAAACACACGATCACTTTTAGGGCAAGTAACACTAAAACCAATCTAGCTAAAAATATTACTATTAGCGTGATCGCTAACAAACTCAAAGAAAGGACTAACTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)