Phage RBP Database

Genbank accession

XSD96658.1 [GenBank]

Protein name

structural protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

Protein sequence

MIDYKALKALFPNGLPEAHNVFATVKANLTYQILRKEYGYAATNRKTWGQFEEAYTEATKPVPVASVNITGAPASLDYTKTVQLAATVLPANADNKTVTWKTSDATLATVSTGGLVTALSKAGTVKITATAGGKSSEVSIQVKAPIVAVTGVTMSPKTITIEAGKTGKLTGTVAPANATNKSVTYTSADTTKATVASDGTVTVPSNLAADSTVVITVKTADGNKTDTATVTAKVPTEGV

Physico‐chemical properties

protein length:	239 AA
molecular weight:	24486,48040 Da
isoelectric point:	9,33736
aromaticity:	0,05021
hydropathy:	-0,00837

Domain architecture

XSD96658.1

1 239 aa

ATT 2–55 · STR 60–233 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR048804
ATT

IPR048804 G3DSA:2.60.40.1080 G3DSA:2.60.40.1080

IPR008964
RBD

IPR008964 IPR008964

IPR003343
STR

IPR003343 IPR003343

IPR003343
STR

IPR003343 IPR003343

XSD96658.1

1239 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0179
STR

DC_0179

DC_1711
RBD

DC_1711

XSD96658.1

1239 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR048804	ATT	DC_0698	2	55	InterPro cluster	Decoration protein, N-terminal domain	N-terminal	High	Text match	62 proteins / 62 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	60	144	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR008964	RBD	IPR008964	61	142	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR003343	STR	DC_0008	63	141	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR003343	STR	DC_0008	63	138	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	145	233	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR008964	RBD	IPR008964	146	231	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR003343	STR	DC_0008	148	229	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR003343	STR	DC_0008	148	228	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits

Proteins with similar domain architecture

Phage

Klebsiella phage vB_Kpl_K7_rec23 [NCBI] · taxon 3412905

Viruses

Host

Raoultella planticola [NCBI] · taxon 575

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

XSD96658.1 [NCBI]

Genbank nucleotide accession

PQ569723 [NCBI]

CDS location

range 3672 -> 4391
strand +

CDS

ATGATTGACTATAAAGCATTAAAAGCACTGTTCCCGAACGGTCTTCCCGAAGCACACAACGTGTTTGCAACCGTTAAAGCAAATCTCACTTACCAGATCCTGCGTAAGGAGTACGGGTATGCTGCTACTAACCGTAAAACCTGGGGTCAGTTTGAAGAGGCTTATACGGAGGCAACTAAGCCAGTACCGGTAGCTTCTGTGAATATCACGGGCGCTCCTGCATCCTTAGATTATACTAAGACTGTGCAGCTAGCCGCAACTGTACTACCGGCAAACGCAGATAATAAAACTGTAACGTGGAAGACTAGTGACGCCACCCTAGCTACAGTTAGCACGGGAGGTCTGGTTACTGCTCTTTCTAAAGCTGGTACAGTTAAGATCACCGCTACAGCAGGTGGTAAGTCTAGCGAAGTCTCTATTCAGGTCAAGGCCCCTATTGTAGCAGTTACTGGTGTCACTATGTCACCTAAGACTATTACAATCGAAGCAGGTAAGACCGGCAAACTTACTGGTACTGTAGCCCCAGCTAACGCAACTAATAAGTCTGTAACTTACACTTCTGCTGACACCACCAAAGCTACTGTAGCCTCGGATGGTACTGTGACAGTTCCTTCTAACTTAGCTGCAGATAGCACTGTAGTTATTACTGTTAAAACAGCTGACGGCAATAAGACCGACACTGCAACAGTAACAGCTAAGGTTCCTACAGAGGGTGTATAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)