Phage RBP Database

Genbank accession

AOO07181.1 [GenBank]

Protein name

hypothetical protein

RBP type

TSP

Evidence RBPdetect

Probability 0,82

TSP

Evidence RBPdetect2

Probability 0,44

Protein sequence

MGKLNVGNLEGNFPNYRVTLHHDSELGIGSQLIIQNQQYMPLPSNTQNYHDNATYGARGAVRGAVRWNTTTEDIEVYNGSVWIPKTPPAAGIGTESNPARSGVEIFNAGLASGNYWIQPDNQVAYEMYVDNDRNGGGWTLCVVARTSTCQDHMNNSAVRITTTSGPRTSNTSTTKMADSWIQALRNSSTYTGSTAYWMEALNFNKSVFISSAATVNLLDSASNDNERTRISTTYQGTLDNRNPNTGTRGFGDHHTSGGTYFAYGRHPEEGNNCGFREDTNGASDGYLWVK

Physico‐chemical properties

protein length:	290 AA
molecular weight:	31737,18350 Da
isoelectric point:	5,78527
aromaticity:	0,09655
hydropathy:	-0,67897

Domain architecture

AOO07181.1

1 290 aa

STR 94–140 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR036056
STR

IPR036056

NF040941
Unmapped

NF040941

AOO07181.1

1290 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0522
ATT

DC_0522 DC_0434

AOO07181.1

1290 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR036056	STR	IPR036056	94	140	Merged direct domain	Fibrinogen-like, C-terminal	Central	Low	Positional only	5 proteins / 5 hits
NF040941	Unmapped	-	108	140	NCBIfam	fibrinogen-like bacterial YCDxxxxGGGW domain	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AOO07181.1

1 290 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	161	161	0,0129
Central domain	162	279	119	0,1117
C-terminal	280	290	10	0,9800

Note: Constraints were applied during segmentation.
Fixed 191 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Synechococcus phage S-RIM2 [NCBI] · taxon 687800

Uroviricota Caudoviricetes Pantevenvirales Nerrivikvirus Nerrivikvirus srim2

Host

Synechococcus [NCBI] · taxon 1129

cellular organisms Bacteria Bacillati Cyanobacteriota/Melainabacteria group Cyanobacteriota Cyanophyceae

Genbank protein accession

AOO07181.1 [NCBI]

Genbank nucleotide accession

KX349271 [NCBI]

CDS location

range 27007 -> 27879
strand +

CDS

ATGGGAAAGTTAAACGTCGGTAACTTAGAGGGTAACTTTCCTAACTACCGAGTTACTCTTCACCATGACAGTGAGTTAGGTATTGGAAGTCAACTGATTATTCAGAATCAGCAGTACATGCCTCTGCCTTCTAATACTCAAAATTATCATGACAATGCAACTTACGGTGCTAGAGGTGCAGTAAGAGGTGCAGTAAGGTGGAATACTACCACCGAAGATATTGAAGTATATAATGGTAGTGTATGGATTCCTAAGACACCTCCTGCTGCAGGGATTGGCACTGAGAGTAATCCTGCTAGAAGTGGTGTAGAGATCTTTAATGCTGGTTTAGCATCTGGTAACTATTGGATTCAACCTGATAATCAGGTAGCATACGAAATGTATGTTGATAATGATAGAAATGGTGGTGGATGGACATTGTGTGTTGTTGCTAGAACATCAACATGTCAAGATCACATGAACAATAGTGCTGTTCGTATTACTACAACTTCTGGACCCAGAACTTCTAACACTTCTACTACCAAGATGGCAGACTCTTGGATTCAAGCACTGCGTAACTCCTCTACATATACTGGAAGCACCGCATATTGGATGGAAGCACTTAACTTTAACAAGAGTGTCTTTATCTCTAGTGCTGCAACTGTCAACTTGCTTGATAGTGCATCAAATGATAATGAGAGAACTAGAATCTCGACTACCTATCAAGGTACTTTAGACAATAGAAATCCTAACACTGGAACCAGAGGTTTCGGTGACCACCATACATCAGGCGGCACATACTTCGCGTATGGTAGACACCCTGAAGAAGGTAATAACTGCGGATTTAGAGAAGATACAAACGGTGCTTCTGATGGTTACTTATGGGTTAAATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)