Protein

View in Explore
Genbank accession
YP_007673202.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence Phold
Probability 1,00
Protein sequence
MSGAKTDELETRSFVDDLIANAGGRTVRIKVSDLLRLMPGEISGPYYQTLSELNADLDWVESAVALVWGDADTQLRGLYRKSGASGSGSWTRYADPPLAAVALADADQAAQDAASSANSATTKAGEAAASAQTASDASVTATTKASEAAASAQTASDASATATTKAGEAAASATSANDAAITATAKATAAANAQTAAEAARDQTLATFDSFDDRYLGAFAAEPTTDNDGNPLVAGALFYDTSAPGMKVYTGSAWAAAYISSSGVVLAANNLSDLTDTSIARTNLGLGDLAQNKFDDFYLDQAAWNAGLVNKWAFISPPQLAATIDARSGESPVVAASGTVIDFTGIPEGVNEVDILVNGLIFGSPDTLVVQLSKAGAFLTTGYSTVIAVVSSSTGSNTVTSGFGMAASNFNVWGQMDLRRLPGSDIWVGKNGGRRGTADAILGAGRVDLGGTLDGLRVTSVSGAAFAGGSVAIRWRF
Physico‐chemical
properties
protein length:477 AA
molecular weight: 48401,70290 Da
isoelectric point:4,37771
aromaticity:0,07128
hydropathy:0,02642

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhodobacter phage RC1
[NCBI] 		754055 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhodobacter sp.
[NCBI] 		1062 Bacteria > Proteobacteria > Alphaproteobacteria > Rhodobacterales > Rhodobacteraceae > Rhodobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007673202.1 [NCBI]
Genbank nucleotide accession
NC_020839 [NCBI]
CDS location
range 813 -> 2246
strand -
CDS
ATGAGCGGAGCAAAAACTGACGAACTCGAAACCCGATCTTTCGTCGACGACCTGATCGCGAACGCCGGCGGACGGACGGTCCGGATCAAGGTGTCTGACCTGCTTCGTCTTATGCCGGGGGAGATCTCCGGGCCGTACTATCAGACCCTGTCCGAGCTGAATGCCGATCTCGATTGGGTCGAAAGCGCTGTTGCTCTCGTCTGGGGCGATGCCGACACGCAGCTTCGCGGTCTCTACCGGAAATCCGGGGCCTCGGGTTCTGGCAGCTGGACCCGCTACGCGGATCCGCCGCTTGCCGCTGTCGCCCTGGCAGATGCCGACCAAGCGGCTCAGGACGCCGCGTCGTCGGCAAACAGCGCGACCACCAAGGCAGGCGAGGCCGCGGCCAGCGCCCAGACCGCCAGCGATGCCTCTGTCACCGCGACCACCAAGGCCAGCGAGGCCGCCGCGAGTGCCCAGACCGCCAGCGATGCATCCGCGACGGCGACCACCAAGGCCGGCGAAGCCGCCGCGAGTGCGACGAGCGCGAATGATGCGGCCATCACCGCGACTGCGAAAGCGACGGCCGCTGCCAACGCTCAGACGGCGGCCGAGGCAGCACGCGATCAGACGCTTGCCACGTTCGATAGCTTCGATGACCGCTATCTCGGGGCCTTTGCGGCGGAGCCGACGACCGACAATGACGGCAACCCGCTGGTCGCCGGGGCACTGTTCTATGACACGAGCGCGCCAGGGATGAAGGTGTATACCGGCTCTGCTTGGGCTGCGGCTTATATCTCGTCTTCTGGTGTCGTCCTCGCCGCGAACAACCTCTCGGACCTGACAGATACTTCGATTGCGAGGACCAATCTCGGGCTCGGGGATCTCGCGCAGAACAAATTCGACGACTTTTACCTTGACCAAGCGGCGTGGAATGCCGGACTAGTCAACAAATGGGCATTCATCAGCCCACCGCAGTTGGCGGCAACAATCGACGCGCGCAGCGGCGAAAGCCCGGTTGTCGCCGCCTCCGGAACTGTAATCGACTTCACAGGAATTCCGGAGGGCGTCAATGAGGTCGATATTCTAGTCAATGGTTTGATTTTTGGGTCCCCTGATACTCTGGTTGTTCAACTCTCGAAGGCTGGGGCATTTCTGACCACGGGCTACAGCACAGTGATCGCCGTCGTATCCTCATCGACCGGATCGAACACCGTCACTTCAGGCTTCGGGATGGCCGCGTCGAACTTCAATGTTTGGGGCCAGATGGATCTGCGGCGGCTTCCCGGATCTGACATCTGGGTCGGAAAGAACGGCGGTCGCCGTGGGACGGCGGATGCGATTCTTGGCGCCGGTCGAGTTGACCTCGGAGGTACGCTTGATGGGCTCCGAGTAACCAGCGTTTCTGGGGCCGCGTTCGCTGGTGGATCAGTTGCAATTCGGTGGAGGTTCTGA

Tertiary structure

PDB ID
d3c5d932666455f54bee1aec685c68ae9863be57482f929fa4b37dc94caf0824
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8656
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Rhodobacter phage RC1 Henn,M.R., Engelen,B., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank