Phage RBP Database

Genbank accession

AFD22280.1 [GenBank]

Protein name

tail protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,66

TF

Evidence RBPdetect2

Probability 0,72

Protein sequence

METFKQGEVTARIDERGIDLGNINVNLYTMDNSTAALDIHIKKRNIFSEEKEFIPVNLNQTSFKPVLHLITEDNSIFTNEELEVVKAEEGHVRYNVSDYVTKHVGRVQAKLFLIDEDSSTDDSSHVADFYFKVNDSGITKAIGKEVHVDMLDDIVERILLKDIERFRGPKGDKGDIGPQGPKGDRGADGVDGEIGPAGPAGPMGPKGDTGEKGLQGEQGPPGKDGTTLSYIDTDWLPLPLINGVMQAGSANQPKYRLVSINDTNLLFFKGAVTNITAKTMTVAKIPKNILQKMDSYSEYTKASINSYMNTMTMYNITITTDEGLKIRLEPNSESDPNRVYYIEGTISL

Physico‐chemical properties

protein length:	348 AA
molecular weight:	38384,73860 Da
isoelectric point:	4,92393
aromaticity:	0,06897
hydropathy:	-0,47874

Domain architecture

AFD22280.1

1 348 aa

ATT 8–157 · STR 168–226 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR018913
ATT

IPR018913 IPR008160

G3DSA:2.60.40.3350
ATT

G3DSA:2.60.40.3350 PTHR24637

AFD22280.1

1348 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0885
STR

DC_0885

AFD22280.1

1348 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR018913	ATT	DC_0557	8	157	InterPro cluster	BppU, N-terminal	Central	Medium	Text match	333 proteins / 333 hits
G3DSA:2.60.40.3350	ATT	G3DSA:2.60.40.3350	19	139	Merged direct domain	G3DSA:2.60.40.3350	N-terminal	Low	Positional only	41 proteins / 41 hits
IPR008160	STR	DC_0536	168	226	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
PTHR24637	Unmapped	-	168	225	PANTHER	COLLAGEN	-	-	-	-

Proteins with similar domain architecture

Phage

Staphylococcus phage StB12 [NCBI] · taxon 1147042

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Staphylococcus hominis [NCBI] · taxon 1290

cellular organisms Bacteria Bacillati Bacillota Bacilli Bacillales

Genbank protein accession

AFD22280.1 [NCBI]

Genbank nucleotide accession

JN700520.2 [NCBI]

CDS location

range 39489 -> 40535
strand +

CDS

ATGGAAACGTTCAAGCAAGGTGAAGTAACTGCTCGCATAGATGAGCGAGGTATTGACTTAGGTAACATCAATGTCAATCTCTACACAATGGATAACTCTACTGCTGCGTTAGATATTCATATTAAAAAACGTAATATCTTTAGCGAAGAAAAAGAATTTATTCCAGTAAATCTAAATCAAACAAGTTTTAAACCTGTATTACATCTAATTACTGAAGATAACTCTATTTTTACTAATGAAGAATTAGAAGTAGTGAAAGCAGAAGAAGGTCATGTGCGTTACAACGTATCTGACTATGTAACAAAGCACGTAGGACGTGTACAAGCAAAATTATTCTTAATTGATGAAGATAGTTCTACTGATGATAGTTCGCATGTGGCAGATTTCTATTTCAAAGTAAACGATAGTGGTATCACGAAAGCAATCGGTAAAGAAGTTCACGTCGATATGCTAGATGATATCGTTGAAAGAATTCTATTAAAAGACATTGAGCGTTTCAGAGGGCCAAAAGGCGATAAAGGTGACATTGGTCCACAAGGCCCGAAAGGTGATAGAGGTGCTGATGGAGTAGATGGTGAGATTGGTCCAGCAGGTCCAGCAGGTCCTATGGGTCCTAAAGGTGATACTGGAGAAAAAGGTTTACAAGGTGAACAAGGGCCACCGGGTAAAGATGGAACAACTCTTTCTTATATAGACACAGACTGGCTCCCTCTTCCATTAATCAATGGAGTAATGCAAGCTGGAAGTGCAAATCAACCAAAATATAGATTAGTTTCTATAAACGATACTAATCTACTATTTTTTAAAGGTGCAGTAACGAATATTACTGCAAAAACAATGACAGTTGCAAAAATACCGAAAAACATTTTACAAAAAATGGATAGTTATTCAGAGTACACAAAGGCTAGTATAAATTCCTATATGAATACAATGACTATGTATAACATAACTATAACAACGGATGAAGGTTTAAAAATAAGGTTAGAACCTAATAGTGAATCAGACCCTAATAGAGTTTATTATATCGAAGGAACAATATCATTATAG

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)