Phage RBP Database

Genbank accession

YP_009889937.1 [GenBank]

Protein name

structural protein with Ig domain

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,68

Protein sequence

MPTITVLVAPEVVRNKPETERNHVVTGVAKGWQKTSLNQDPDEILTECKGLDALLTKSNLQADGVTKVDPTKPIGFQVSYEIHDPNAILTTGLVITPATASGEIGQFVELLATVSPANATYQGVNWYSGDITKAVHVGGGKFKLLASGTVTVYGVTVEGNHTDSTVITVAGALSLSTDLPATKDVTSGQDGTFSVVAAGGTTPYTYVWHFSDTPGGAGSVIDAGTNATAATANLVITAVEAANEGEYWCVVSDADGHSVTSTRCEMAVV

Physico‐chemical properties

protein length:	269 AA
molecular weight:	27825,74120 Da
isoelectric point:	4,63820
aromaticity:	0,05948
hydropathy:	0,05390

Domain architecture

YP_009889937.1

1 269 aa

STR 87–269

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.60.40.1080
STR

G3DSA:2.60.40.1080 IPR013783

IPR008964
RBD

IPR008964 IPR036179

IPR007110
STR

IPR007110

IPR003599
STR

IPR003599

PF13927
STR

PF13927

cd00096
STR

cd00096

YP_009889937.1

1269 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0078
STR

DC_0078

DC_2066
RBD

DC_2066

YP_009889937.1

1269 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	87	170	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR008964	RBD	IPR008964	88	166	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR007110	STR	DC_0008	164	260	InterPro cluster	Immunoglobulin-like domain	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR013783	STR	IPR013783	176	267	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR036179	RBD	IPR036179	179	263	Merged direct domain	Immunoglobulin-like domain superfamily	C-terminal	Low	Positional only	1 proteins / 1 hits
IPR003599	STR	DC_0008	180	269	InterPro cluster	Immunoglobulin domain subtype	C-terminal	Medium	Text match	304 proteins / 473 hits
PF13927	STR	DC_0008	182	252	InterPro cluster	Immunoglobulin domain	C-terminal	Medium	Text match	304 proteins / 473 hits
cd00096	STR	DC_0826	200	262	InterPro cluster	Ig	C-terminal	Low	Positional only	1 proteins / 1 hits

Proteins with similar domain architecture

Phage

Salmonella phage SE14 [NCBI] · taxon 2592196

Uroviricota Caudoviricetes Pantevenvirales Cvivirinae Kuttervirus

Host

Salmonella sp. [NCBI] · taxon 599

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YP_009889937.1 [NCBI]

Genbank nucleotide accession

NC_049512 [NCBI]

CDS location

range 36956 -> 37765
strand -

CDS

ATGCCAACAATCACAGTATTAGTCGCACCGGAAGTTGTCCGCAACAAACCCGAAACCGAACGCAATCATGTCGTGACGGGTGTTGCAAAGGGTTGGCAAAAGACCAGCCTCAACCAAGATCCTGACGAGATCCTGACCGAATGTAAAGGTCTTGACGCTCTTCTCACCAAGAGCAATTTACAAGCGGACGGTGTCACCAAAGTGGATCCCACCAAGCCTATCGGCTTTCAAGTATCTTATGAAATCCACGATCCGAATGCCATTTTAACCACCGGACTTGTGATTACTCCAGCTACAGCCAGCGGAGAGATCGGGCAATTTGTTGAATTGCTAGCGACGGTATCCCCTGCCAATGCCACATATCAAGGCGTTAATTGGTATTCTGGTGATATTACGAAAGCTGTACATGTCGGTGGTGGTAAATTCAAATTACTGGCTTCAGGAACTGTAACGGTTTATGGTGTCACGGTTGAAGGGAATCACACAGATTCTACGGTTATTACAGTTGCAGGCGCTCTATCGCTGTCGACTGATTTACCTGCCACCAAAGACGTAACTTCTGGACAAGACGGAACCTTTAGTGTTGTTGCTGCGGGCGGTACAACTCCATACACTTATGTGTGGCATTTCTCTGATACTCCTGGGGGTGCGGGGTCAGTTATCGATGCTGGCACTAATGCCACCGCCGCCACTGCTAACCTGGTTATCACAGCAGTTGAAGCCGCAAATGAAGGCGAATATTGGTGTGTTGTTTCTGATGCAGATGGCCATTCTGTCACGTCTACTCGTTGTGAAATGGCTGTGGTGTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)