Phage RBP Database

Genbank accession

UGO54080.1 [GenBank]

Protein name

tail fiber protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,98

TF

Evidence UniProt/TrEMBL

Probability 1,00

Protein sequence

MADKSPVKISQLPEPTGTGINDSDIFAASRITGADKLETQRITVSELRKLMDYGNAFSDLNAAIAATVKDQQFYVFVDDSKEFVYRYVNMGGIASPVLSADGTPVKEPTKNLLRNLGDIKSQDGFGLVGAVTSFDALRKLTPRAAGWRVYLAGYYEGTTLGSGFFVSKSGVATDDQGVIAVVNGSYYWERVLETNESIPMDYYGIRPGDDISDKLNFAVIAAKVRNIVDISLPGTPFDKPFILSKKVDIDLTDGKVIFIKGACNKIGTIIQHRFDGTAFYFHRNHVSSKNFWNTGGIENVTITCHTDYQQTATAAAIQISDTWGFIVNRVRILNFKAGNGIVVKNETAWTEGTKITDVDIRATQNGVLFTRDVTNDKNTNSFFGTYFNQYSFQAGTGKAGTSAIRVGDAATDAANKTCVLYGSEIQFRYWAEGGGANFGLMVSSSGQVTSGNTLIIPDGVGLSANDTITATPLKCIAVRGNGTYLNNTTIEPYQGRMNCFKVKDINFALEALLSFEKGVGVNSTLFKGRPVIDPKGLRFYTYQEFTGDEIKDGFSVGMTNLPVGTRLRVVLRYSTTDNDDNSRISSYIVSVGGAGMFTTVAPENIAILNNVTTTKSAVSGTDVVTDVGINDGRSRLNDWVDTATSPRVVNGNATQTNKDGYGTNARNFRIVVPANPAATATLKLGVEVEFI

Physico‐chemical properties

protein length:	691 AA
molecular weight:	74745,13140 Da
isoelectric point:	6,21809
aromaticity:	0,09696
hydropathy:	-0,15412

Domain architecture

UGO54080.1

1 691 aa

RBD 131–192 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR059934
RBD

IPR059934

UGO54080.1

1691 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1164
ATT

DC_1164 DC_0545

DC_0717
ATT

DC_0717

UGO54080.1

1691 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR059934	RBD	DC_0541	131	192	InterPro cluster	Phage tail protein-like, small four-stranded beta-sheet domain	C-terminal	Low	Positional only	683 proteins / 690 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

UGO54080.1

1 691 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	212	212	0,9944
Central domain	213	505	294	0,9931
C-terminal	506	691	185	0,9829

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Serratia phage vB_SmaM_Haymo [NCBI] · taxon 2902685

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host No host information

Genbank protein accession

UGO54080.1 [NCBI]

Genbank nucleotide accession

OL539468.1 [NCBI]

CDS location

range 112576 -> 114651
strand +

CDS

ATGGCCGATAAATCACCAGTTAAAATATCTCAGTTACCCGAGCCTACCGGGACTGGGATTAACGATAGCGACATCTTCGCGGCATCCCGTATAACGGGAGCAGATAAGTTAGAGACTCAACGTATCACTGTCAGCGAATTGCGTAAGCTGATGGATTACGGTAATGCATTCTCTGACTTGAACGCAGCTATTGCAGCAACCGTTAAAGATCAACAGTTTTACGTATTCGTTGATGACTCGAAAGAGTTCGTTTACCGTTACGTGAACATGGGCGGAATTGCTTCCCCAGTTTTAAGTGCCGATGGTACACCTGTTAAAGAACCAACTAAAAACTTACTGCGTAATCTTGGCGATATTAAAAGTCAAGATGGTTTCGGTTTAGTTGGGGCAGTGACCTCTTTCGATGCCCTGCGTAAGTTAACACCTCGTGCTGCCGGCTGGCGAGTCTATCTTGCAGGTTATTACGAAGGGACTACTTTAGGTTCCGGATTCTTCGTTTCTAAATCTGGTGTAGCTACTGATGACCAAGGTGTCATTGCCGTTGTTAACGGTAGCTATTATTGGGAACGTGTACTGGAAACTAACGAAAGTATCCCAATGGATTATTACGGTATCCGTCCTGGTGATGATATTTCCGATAAACTCAACTTTGCAGTTATTGCAGCTAAAGTTCGGAATATCGTAGATATCTCTTTGCCAGGGACACCTTTCGACAAACCATTCATCCTTTCTAAAAAAGTAGATATCGATCTCACCGATGGAAAGGTCATCTTTATTAAAGGTGCATGTAACAAGATCGGTACAATCATTCAACATAGGTTCGATGGAACCGCATTCTATTTCCACCGCAACCATGTGTCCAGTAAGAACTTCTGGAACACTGGCGGTATTGAGAATGTTACAATCACCTGCCATACTGACTATCAACAGACAGCAACTGCGGCTGCAATCCAGATTTCAGATACCTGGGGCTTTATTGTAAACCGTGTTCGTATCCTTAACTTCAAAGCCGGCAACGGTATCGTCGTTAAGAATGAGACAGCATGGACTGAAGGGACTAAGATCACCGACGTCGATATTCGAGCCACTCAAAACGGCGTGCTGTTTACCAGGGATGTAACCAACGATAAGAACACCAACTCGTTCTTCGGTACTTACTTCAATCAATATAGTTTCCAGGCCGGTACTGGTAAGGCCGGTACTTCCGCTATTCGTGTAGGCGATGCAGCTACAGACGCCGCTAACAAAACATGTGTCCTCTACGGTTCTGAAATTCAGTTCCGCTATTGGGCAGAAGGTGGCGGCGCTAACTTCGGACTGATGGTTTCTAGTAGTGGCCAGGTTACATCAGGCAACACGCTAATTATCCCAGATGGTGTTGGGTTGAGTGCTAATGATACCATCACCGCTACTCCGCTTAAATGTATCGCAGTACGTGGTAATGGGACCTACCTGAACAACACGACAATCGAACCTTACCAGGGGAGAATGAACTGCTTCAAGGTTAAGGATATTAACTTTGCACTGGAAGCTCTGCTCAGTTTTGAGAAAGGTGTCGGCGTCAACAGTACCTTGTTCAAAGGTCGTCCTGTTATCGATCCTAAAGGCCTGCGGTTCTATACCTACCAAGAGTTCACTGGGGATGAAATCAAAGATGGATTCTCAGTTGGGATGACTAACCTTCCGGTAGGTACTCGTCTACGTGTTGTGTTACGCTACTCTACTACCGACAATGATGATAACAGCCGTATATCTTCGTACATCGTTTCTGTTGGTGGTGCTGGTATGTTCACTACAGTAGCTCCGGAGAATATCGCTATTCTTAATAATGTCACAACGACTAAGTCAGCAGTTAGTGGGACGGATGTTGTTACTGATGTAGGGATTAACGATGGGCGTTCACGCCTTAACGATTGGGTGGATACTGCGACAAGTCCACGCGTCGTTAACGGTAACGCAACGCAGACTAACAAAGACGGCTACGGAACCAACGCACGTAACTTCCGCATCGTTGTACCAGCTAACCCGGCTGCTACAGCTACCCTGAAACTGGGTGTTGAAGTGGAATTCATTTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)