Protein

View in Explore
Genbank accession
QIG66676.1 [GenBank]
Protein name
tail host specificity protein J
RBP type
TSP
Evidence RBPdetect
Probability 0,70
TF
Evidence RBPdetect2
Probability 0,95
TF
Evidence Phold
Probability 1,00
Protein sequence
MKNSMWHPSGFPRMITGSKGGGKGSSGGGSESPNTLRSKATVRLLDMLGEGEIKGLVNGAKSIYLNETPLVSASGDYNFKGVNWDIRVGLPSQSVMPGASGVEAITNVGAQVKYGAPLTRSLTDPDYDACKVTIRIPALSKADDKGNINGTTLQFVIDIRYQGGAFTTSSGVITLTGKCTSPYDREFYFALPKNPGGASAPWEIRVTRLTPDSDSVKLQNDMYFSSFEGTIEAKFSYPYTAYVGMVVDGEQFNQQIPERKYLIDGRIIKVPSNYTTRLYDVNGNISRNPSYSGVWDGTFKMEWTNNPAWVFYDMVTNDRFGLGDYIDVSQVDKWGLYEIAKYCDEYVPNGIGGVEPRMTFNGVVATKREAYDTLSSMASCFRGMAYWSSGSIVTTQDRPKDPVVLASQSNVVDGQFDRQSTALKSRHTVAMAKFLNPQDFYREDYAIYQDEAGIAKYGYRDTKFEAVGCTSRGQAYRMAKWTVLTELYEKGTTTYQAGLDHAGVRPGDIIAIQDPSLANVEFGGRISGGKPELITNGFFGAGITGWTSSVSSGGAVTWGAGNVTIKGNGTTRSYIEQAITTEVGKTYRMQITPSGGQAVTVWVGTTQGASDLSSTTPSAYSEISFTATGTTTWLRFSRQPTTTVTIDNISVREQTNTPSVINVDTPVTFEGGNLYWLNVQMPDGSIEESNIVIAAYDTPTTQITVSPAFTKTPDAESQWIISRNDLVPELIRCITIKESEPNKYDVMGLQYEPSKFAAVDVDAQFSLINTSDFPTGELGVPTAPLFNEYAYALGQTGTIMALDWSITAPKDPRIGQFEWQYQTRTETGTLNGWQAAGFTYDPIITIQDLEAGLYNFRVRCLGSFGVGVSGWTVSNDILLQGLNLPPATPTQFRISVLGDQSQFTWRVANQLNIRFYEIRHTPNVVDPEWNSAVVLVKEVAASGIQLPTMAGTFLIKSVSFTGVYSLDAAMIQNGVLGQALNAVEVLDEATAGFLGTKGNTLVVSGDLQLKPYNGNFPPLGVYGFNAPVDLGDEYTSRLSATIDIFGLDVRDTIDKWTSLDTVTALSTARSDQWSFELEYATTLDNPVAVVARASTGTYFDADGILKTAANNVPRYNYTPSDLSAVGVLLAEAAGTNLILQSQTFDNASWTKTNLTVTANAIAAVDGTTTADKLTEDTTASAVHQTAQQFAVTSGQSYVGSTFFKAGSAGRLLRVTMGAAFASNCWASFDPVTELVTLGADAVAAGFIKCLDGNYRVWVKGTATSTGNATLYISMQTSTSPVYTGDGTSFIYVWGAQAEQGAAMTSYIPTTTATVTRAAETITSQPTWTDWEQFITRDVNFRAIKFRAKLISNDPAVTPVLRGLTVNVDMPDRIIAGNDIAVPTAGLSIVFDPPFKGLTGLSMASQDMATGDRALITAKSENGFTIRYFNSTGTAVARTFDYNAVGYGVKK
Physico‐chemical
properties
protein length:1450 AA
molecular weight: 156716,68700 Da
isoelectric point:4,91500
aromaticity:0,10345
hydropathy:-0,16407

Domains

Domains [InterPro]
IPR053171
15–527
IPR053171 G3DSA:2.60.120.260
IPR055385
102–232
IPR055385 IPR032876 IPR008979
QIG66676.1
1 1450
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_TM16
[NCBI] 		2509755 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG66676.1 [NCBI]
Genbank nucleotide accession
MN988459 [NCBI]
CDS location
range 6717 -> 11069
strand +
CDS
GTGAAGAACTCTATGTGGCATCCTTCTGGCTTTCCCCGGATGATCACCGGCTCGAAAGGTGGTGGTAAAGGCTCTTCCGGGGGAGGATCGGAAAGCCCGAACACCCTCCGCTCGAAGGCCACCGTCCGCCTCCTCGACATGCTTGGGGAAGGCGAAATCAAGGGCCTCGTCAACGGGGCCAAGTCGATCTACCTGAACGAGACGCCACTGGTCTCGGCTTCGGGCGACTACAATTTCAAGGGCGTCAACTGGGACATCCGTGTCGGCCTCCCCAGCCAGTCGGTGATGCCGGGAGCCTCGGGCGTCGAAGCCATCACCAACGTCGGTGCCCAAGTGAAATATGGTGCACCGCTGACGCGCTCGCTGACAGACCCAGACTATGACGCCTGCAAGGTGACGATCCGTATCCCGGCGCTCTCCAAGGCTGATGACAAGGGCAACATCAACGGCACGACGCTGCAGTTCGTGATCGACATCCGCTATCAGGGCGGGGCGTTCACCACCTCGTCTGGCGTTATCACCCTGACCGGAAAGTGCACCTCGCCCTATGACCGCGAGTTCTACTTCGCGCTGCCGAAGAACCCGGGCGGGGCATCTGCGCCGTGGGAAATCCGCGTCACCCGCCTGACCCCTGACAGCGACAGCGTCAAGCTCCAGAACGACATGTACTTCTCGTCGTTCGAGGGCACCATCGAAGCCAAGTTCAGCTACCCCTACACCGCTTACGTCGGCATGGTGGTCGATGGCGAGCAGTTCAACCAGCAAATCCCAGAGCGCAAGTACCTGATCGATGGCCGCATCATCAAGGTGCCGTCGAACTACACCACCCGCCTCTACGACGTGAACGGCAACATCAGCCGAAACCCGTCCTACTCGGGGGTCTGGGACGGCACCTTCAAGATGGAGTGGACGAACAACCCCGCGTGGGTGTTCTACGACATGGTGACCAACGACCGCTTCGGACTGGGGGACTACATCGACGTCAGCCAAGTCGATAAGTGGGGCCTCTACGAGATCGCCAAGTACTGCGACGAATACGTGCCGAACGGCATCGGTGGCGTTGAGCCCCGCATGACCTTCAACGGCGTCGTGGCCACCAAGCGCGAAGCCTACGACACCCTGTCGTCCATGGCCTCCTGCTTCCGTGGGATGGCTTACTGGTCCTCGGGCTCGATCGTCACCACACAGGACCGACCGAAGGACCCTGTCGTCCTCGCCTCGCAGTCGAACGTCGTTGACGGCCAGTTCGACCGCCAGAGCACGGCGCTGAAGAGCCGCCACACCGTCGCCATGGCGAAGTTCCTCAATCCGCAGGACTTCTACCGCGAAGACTACGCGATCTATCAGGACGAAGCCGGGATCGCCAAGTACGGCTATCGCGACACCAAGTTCGAGGCTGTCGGCTGCACCTCTCGCGGTCAGGCCTACCGCATGGCCAAGTGGACGGTGCTGACCGAACTCTATGAGAAGGGCACGACCACCTATCAGGCCGGTCTCGATCACGCTGGCGTCCGCCCGGGCGACATCATTGCCATTCAGGACCCGTCGCTGGCCAACGTCGAATTCGGCGGCCGTATTTCTGGGGGCAAACCGGAACTGATCACCAACGGCTTCTTCGGGGCCGGGATCACCGGCTGGACCTCTTCTGTATCCTCGGGTGGCGCGGTCACGTGGGGCGCGGGCAACGTCACCATCAAGGGCAACGGCACGACCCGCAGCTACATCGAGCAGGCGATCACCACGGAAGTCGGCAAGACCTACCGGATGCAGATCACCCCGTCTGGCGGCCAAGCCGTGACCGTCTGGGTGGGAACGACGCAGGGGGCCTCCGACCTGTCGAGCACTACGCCCTCGGCGTACAGTGAAATATCTTTCACTGCCACAGGCACGACGACATGGCTGCGTTTCAGTCGCCAGCCGACCACTACCGTCACCATAGATAACATCTCGGTACGGGAGCAGACCAACACGCCGTCCGTCATCAACGTCGATACGCCGGTCACTTTCGAGGGCGGCAATCTCTACTGGCTGAACGTCCAGATGCCGGATGGCTCGATCGAGGAAAGCAACATCGTCATCGCGGCCTACGACACGCCGACGACACAGATCACAGTCTCCCCGGCGTTTACCAAGACACCGGACGCGGAGAGCCAGTGGATCATATCGCGCAACGACCTCGTGCCCGAACTGATCCGCTGCATCACCATCAAGGAGAGCGAACCGAACAAGTACGACGTCATGGGCCTGCAGTACGAACCTTCGAAGTTCGCGGCTGTGGACGTGGACGCTCAGTTCTCGCTGATCAACACCTCGGACTTCCCGACCGGCGAGCTTGGCGTGCCCACGGCTCCGCTGTTCAACGAATACGCCTACGCCCTCGGCCAGACGGGCACGATCATGGCCCTCGACTGGTCGATCACCGCGCCGAAGGACCCGCGCATTGGCCAGTTCGAATGGCAGTACCAGACCCGCACGGAAACCGGGACCCTGAACGGCTGGCAGGCGGCAGGCTTCACCTATGACCCGATCATCACCATTCAGGACCTCGAAGCCGGTCTCTACAACTTCCGTGTCCGCTGCCTCGGCTCCTTCGGTGTCGGGGTCTCGGGCTGGACGGTGTCGAACGATATCCTGCTGCAGGGCTTGAACCTGCCCCCGGCCACGCCGACCCAGTTCCGCATCTCCGTCCTCGGGGATCAGAGCCAGTTCACGTGGCGGGTGGCCAACCAGTTGAACATCCGCTTCTACGAAATCCGCCACACGCCAAACGTCGTGGACCCGGAGTGGAACTCGGCTGTCGTCCTCGTCAAGGAAGTCGCAGCCTCGGGCATCCAGCTTCCGACCATGGCCGGTACCTTTCTGATCAAGTCGGTGTCGTTCACCGGGGTCTATTCGCTCGATGCGGCGATGATCCAGAACGGCGTCCTCGGGCAGGCGCTGAACGCGGTGGAAGTTCTGGACGAAGCAACCGCAGGCTTCCTCGGCACCAAGGGAAACACTCTCGTGGTATCCGGCGACCTGCAGCTAAAGCCCTACAACGGCAACTTCCCGCCGCTGGGGGTTTACGGCTTCAACGCCCCTGTTGACCTCGGGGACGAATACACCTCGCGCCTGTCGGCCACCATCGACATCTTCGGCCTAGACGTCCGCGACACGATCGACAAGTGGACGTCGCTCGATACGGTGACAGCGCTCTCGACGGCACGATCCGACCAGTGGAGCTTCGAACTCGAATACGCCACGACGCTGGACAACCCCGTCGCCGTGGTCGCTCGTGCCTCGACCGGCACCTACTTCGACGCCGATGGTATTCTGAAGACGGCGGCCAACAACGTTCCGCGCTACAACTACACGCCATCCGATCTGAGTGCCGTTGGCGTGCTGCTGGCGGAAGCGGCAGGGACCAACCTGATCCTGCAGTCGCAGACCTTCGACAACGCTTCGTGGACCAAGACCAACCTGACGGTCACGGCCAATGCTATCGCAGCCGTGGACGGCACGACGACGGCCGACAAACTGACGGAAGACACGACCGCTTCGGCCGTGCACCAGACCGCGCAGCAGTTCGCCGTCACCTCTGGCCAGAGCTACGTAGGGTCCACCTTCTTCAAGGCTGGGAGTGCTGGCCGCCTGTTGCGTGTGACGATGGGAGCGGCGTTTGCCTCCAACTGCTGGGCCTCCTTCGACCCCGTGACAGAACTTGTCACCCTCGGGGCTGACGCCGTAGCTGCAGGCTTCATCAAGTGCCTCGACGGCAACTACCGCGTCTGGGTGAAAGGGACGGCAACGTCTACCGGCAACGCCACCCTGTACATCTCGATGCAGACCTCGACCTCGCCAGTCTACACTGGCGACGGCACGTCCTTCATCTACGTCTGGGGCGCACAGGCCGAACAGGGCGCGGCAATGACGTCTTACATCCCGACGACGACGGCCACGGTGACCCGCGCAGCGGAAACCATCACCTCACAGCCGACGTGGACGGACTGGGAGCAGTTCATCACCCGCGACGTGAATTTCCGGGCGATCAAGTTCCGCGCCAAGCTGATCTCGAATGACCCTGCGGTTACGCCCGTGCTCCGGGGCCTCACGGTGAACGTTGACATGCCTGACCGCATCATCGCAGGAAATGACATCGCGGTTCCAACTGCAGGTCTGTCGATCGTCTTCGATCCTCCCTTCAAGGGCCTCACTGGTCTGTCGATGGCGAGCCAAGACATGGCGACCGGCGACCGCGCACTCATCACTGCGAAGTCTGAGAACGGCTTCACCATTCGCTACTTCAACAGCACAGGAACGGCTGTGGCTAGAACCTTCGACTACAACGCAGTTGGCTACGGAGTGAAGAAATGA

Tertiary structure

PDB ID
d75fc28b4d548dd503c08f2964cd1b361364558e14865d0b28c1acaaeaee6417
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8504
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank