Phage RBP Database

Genbank accession

XPP55787.1 [GenBank]

Protein name

central tail fiber J

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,68

TF

Evidence RBPdetect2

Probability 0,99

Protein sequence

MSVVTEKRHQPLRGSKGGSSKPKQPHIAQNGVASLSTARIVYLLSWGPIVGPVNGLKSIKLDGTPIQAEDGTLNYPDVKWQFRPGELNQERLEGVAESSNEIAVGQTLLSTQPYIYTVTNATADAVRVRLSWPNLQAQDSSGNINGVRIEYAIDVATDGAPYQTVLSTFVDRKNVTTYYRSHRINLPAGGHWAVRVRRITPEANSSLVQDTMMLTAIAEVVDSNQEFPLTAVGCVEYDAQQFGGDFPKFSALMRGRIVRVPMNYDPETRTYFTGGPGTTNGVWDGTFKEAYSNNPAWVFYDLVLNPYYGLGERIDQSMVNRWALYRIAQYCDQLVPDGKGGQEPRFTCNLYLQKQEEAYAVLQDLAAIFHGLAFWDGSQITVNADMPQDPVYTYSTSQILNDGVVAYSGTRTRDRHSLAMVSWDNPANAFETDKEPVFDEDAIIELGGIVREVSVGALGCTSQGQAQRAGQWALMTEQLQTRGAVWKVGLDGFIPRPGQVVALADPMLAGRANGGRISAVSGRAITVDRDVDIPVGARLRVNLPSGRSEARAIQGHDGRVITVVADFSEEPSPESGWAIDYDDLALMQFYVKNVTRPSWEQFQLEVIQHEPGKFDAIDHGAIIDSRPISVLPSGVQDPPARVLISQHIAVEQGLAVTIMTIAWDAAPDAVAYDVEWRWGSREWVRVPRTGELMVEVRGVYTGQYLARVRAVNSMNVSSIPANSVLTNITGKTGAPPALAFLRTTSGPWKIGLEWGFPASGAADTAYTEIQQSVTPGGSEQNATALGLFAYPTDTHTLTSLAAGARLAFRGRLIDRTGNVGPWSAWVDGISSTDASEYNELITKEYVESALGEQFFENIEQIGGNVDQLMEQYYDAGTVYQKGQIVRLNGRFYQALQDVPAGNPPPNPVYWADVGELVESVDALALRVTENAAAIEELDGVVQSSASSLDVLQAAARREPATGEKADALKGWDTIARAATEVIVRANEIEAQAKRVETVQAQTSANGAAIQTTQSVVASLDQGVKAMYSVKLQAHANGQQYATGFQLGFDSGTSVTTMAFQADRFLWFNSSSGQTVAPVSIVGGQMFINNAMIQDGSITNAKIGNVIQSTALGANGEPLWKLDKAGSLTMNSATSGGFMRQTAEAVKVYDANLVLRVQIGNLDA

Physico‐chemical properties

protein length:	1163 AA
molecular weight:	126041,73050 Da
isoelectric point:	4,94530
aromaticity:	0,08340
hydropathy:	-0,20817

Domain architecture

XPP55787.1

1 1163 aa

ATT 99–222 · ATT 354–521 · STR 656–718 · ATT 872–915 · RBD 1008–1141 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171 IPR015406

IPR055385
ATT

IPR055385 IPR032876 IPR036116 G3DSA:2.10.10.20

XPP55787.1

11163 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0014
STR

DC_0014

XPP55787.1

11163 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	6	954	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	99	222	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	354	521	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR036116	STR	IPR036116	656	718	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
G3DSA:2.10.10.20	ATT	G3DSA:2.10.10.20	872	915	Merged direct domain	G3DSA:2.10.10.20	N-terminal	Low	Positional only	19 proteins / 19 hits
IPR015406	RBD	DC_0135	1008	1141	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XPP55787.1

1 1163 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	519	519	0,8904
Central domain	520	1029	511	0,0547
C-terminal	1030	1163	133	0,3642

Note: Constraints were applied during segmentation.
Fixed 36 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pseudomonas phage 5371 [NCBI] · taxon 3403569

No lineage information

Host No host information

Genbank protein accession

XPP55787.1 [NCBI]

Genbank nucleotide accession

PQ758388.1 [NCBI]

CDS location

range 5733 -> 9224
strand -

CDS

ATGTCTGTTGTGACCGAGAAGCGCCATCAGCCTTTGCGTGGAAGCAAGGGGGGCAGTTCCAAGCCGAAGCAGCCGCACATCGCCCAGAACGGCGTCGCATCGCTGTCCACTGCTCGGATCGTGTATCTCCTGAGCTGGGGTCCGATTGTTGGCCCAGTCAATGGACTCAAGTCGATCAAGCTTGACGGTACTCCGATCCAGGCAGAAGACGGCACGCTGAACTATCCCGACGTGAAGTGGCAGTTTCGACCGGGCGAGTTAAATCAGGAGCGACTGGAAGGTGTAGCGGAGTCCAGCAACGAGATTGCGGTGGGCCAGACCTTGCTCAGCACGCAGCCCTACATCTACACCGTCACGAACGCCACGGCGGATGCGGTACGCGTGCGCCTGTCCTGGCCCAACCTGCAGGCGCAGGATTCGTCCGGGAACATCAATGGGGTGCGCATTGAGTACGCGATCGATGTCGCCACGGATGGCGCTCCTTACCAGACCGTACTCAGCACGTTTGTCGACCGGAAGAACGTTACGACTTACTACCGTTCTCATCGGATCAACCTGCCGGCAGGAGGGCACTGGGCGGTTCGCGTGCGGCGGATCACGCCTGAGGCGAACAGCTCTCTGGTCCAGGACACCATGATGCTGACTGCGATAGCTGAAGTTGTCGACAGCAACCAGGAGTTTCCGCTCACCGCCGTTGGCTGCGTGGAGTATGACGCCCAGCAGTTCGGGGGCGACTTTCCGAAGTTCTCTGCGCTCATGCGCGGGCGGATCGTGCGGGTTCCGATGAACTATGACCCTGAGACTCGGACCTATTTTACCGGCGGCCCCGGTACCACGAATGGCGTTTGGGACGGCACCTTCAAGGAGGCTTATTCCAACAATCCGGCCTGGGTCTTCTATGACCTGGTGTTGAACCCCTATTACGGTCTGGGTGAGCGCATCGACCAGAGCATGGTCAACCGTTGGGCCCTCTATCGCATTGCGCAGTACTGCGACCAGTTGGTGCCAGACGGGAAAGGCGGTCAAGAGCCTCGGTTCACTTGCAACCTCTATCTTCAGAAGCAAGAGGAGGCGTATGCCGTTCTTCAGGACCTCGCCGCAATCTTTCATGGGTTGGCGTTCTGGGATGGTAGCCAGATCACTGTCAACGCCGACATGCCTCAGGACCCGGTTTACACCTACTCCACTTCGCAGATTCTGAACGATGGCGTGGTTGCGTATTCGGGGACGCGGACGCGAGACCGCCATTCGCTGGCGATGGTCTCTTGGGACAACCCGGCCAATGCGTTCGAGACAGACAAAGAGCCGGTCTTCGACGAGGATGCGATTATCGAGCTTGGCGGGATCGTCAGGGAGGTATCGGTCGGGGCTCTCGGCTGCACCAGCCAGGGTCAGGCGCAGCGGGCGGGGCAGTGGGCGCTTATGACTGAGCAGTTGCAGACTCGTGGGGCCGTCTGGAAGGTTGGCCTGGATGGATTCATCCCGCGGCCTGGACAGGTGGTGGCTCTGGCAGACCCCATGCTTGCCGGTCGTGCGAATGGCGGCAGGATCTCGGCGGTATCTGGACGAGCAATCACCGTAGACCGAGATGTGGATATCCCGGTCGGCGCGCGGCTGCGAGTCAACCTGCCCAGTGGGCGCTCGGAAGCCAGGGCGATTCAAGGTCATGACGGACGCGTCATAACGGTGGTGGCCGACTTCAGTGAAGAGCCTTCCCCCGAGAGCGGTTGGGCGATCGACTACGACGACCTGGCCCTGATGCAGTTCTACGTCAAGAACGTGACCAGACCAAGTTGGGAGCAATTCCAGCTTGAGGTTATCCAGCACGAGCCCGGCAAGTTTGATGCGATCGATCACGGGGCGATCATCGATTCTCGGCCGATCAGCGTCCTCCCGTCCGGGGTGCAGGATCCACCTGCACGCGTATTGATCTCGCAGCACATCGCGGTCGAGCAAGGCCTGGCGGTCACGATCATGACCATCGCCTGGGACGCGGCACCGGACGCGGTAGCGTACGACGTAGAGTGGCGCTGGGGCTCGCGCGAGTGGGTCAGGGTTCCGCGTACGGGGGAGCTGATGGTGGAAGTACGTGGGGTATACACCGGCCAGTACCTTGCGCGCGTGCGGGCTGTGAACTCCATGAACGTGTCGTCGATCCCAGCGAACTCGGTGTTGACCAACATCACCGGCAAGACCGGTGCGCCGCCGGCGCTGGCGTTCCTGCGTACCACCAGCGGACCGTGGAAGATCGGCCTGGAGTGGGGATTCCCGGCCAGTGGCGCGGCGGACACCGCCTACACCGAGATCCAACAGTCGGTTACCCCAGGCGGCAGCGAACAGAACGCAACTGCCCTGGGCTTGTTTGCCTACCCGACCGACACCCACACGCTGACCTCGCTCGCGGCCGGCGCTCGCTTGGCCTTCCGCGGGCGGCTGATCGACAGGACCGGCAACGTCGGCCCCTGGTCGGCCTGGGTCGACGGTATCAGCTCGACAGATGCGAGCGAGTACAACGAACTGATCACCAAGGAGTACGTCGAGTCCGCCCTCGGCGAGCAGTTCTTCGAAAACATCGAGCAAATCGGCGGTAACGTCGACCAGTTGATGGAGCAGTACTACGACGCCGGCACGGTATACCAGAAGGGCCAGATCGTTCGATTGAACGGCAGGTTCTATCAAGCCCTCCAGGACGTTCCCGCGGGCAATCCGCCGCCGAACCCCGTTTACTGGGCTGATGTGGGCGAGCTCGTCGAATCGGTCGATGCCCTTGCGTTACGCGTGACTGAGAATGCGGCCGCGATTGAAGAGCTCGACGGTGTTGTTCAGTCCAGTGCCTCCAGCCTGGACGTGCTGCAAGCAGCCGCGCGCCGGGAGCCGGCTACCGGAGAGAAAGCGGATGCACTGAAGGGGTGGGACACCATTGCTCGAGCAGCCACCGAGGTCATCGTGCGCGCGAATGAGATCGAGGCGCAGGCGAAGCGTGTAGAGACCGTCCAGGCGCAAACGAGCGCCAACGGGGCCGCGATTCAGACCACGCAGAGCGTTGTAGCGTCACTGGATCAGGGCGTGAAGGCGATGTACAGCGTGAAGCTCCAGGCCCATGCCAATGGGCAGCAGTACGCCACCGGGTTCCAGCTTGGGTTCGACAGCGGTACGAGCGTGACGACCATGGCGTTCCAGGCTGATCGGTTCCTCTGGTTCAACAGTTCCAGCGGGCAGACCGTGGCGCCGGTCTCGATCGTCGGAGGCCAGATGTTCATCAACAACGCGATGATTCAGGACGGTTCGATTACGAACGCGAAGATCGGCAACGTGATTCAGTCGACCGCACTCGGTGCCAACGGCGAGCCGCTGTGGAAGCTTGATAAAGCAGGGAGTTTGACGATGAACAGCGCAACGTCCGGAGGCTTCATGAGGCAGACAGCGGAGGCCGTTAAAGTCTACGACGCGAACCTGGTGTTACGGGTACAGATCGGGAATCTCGACGCATGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)