Phage RBP Database

Genbank accession

QDK00796.1 [GenBank]

Protein name

central tail fiber J

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,84

TF

Evidence RBPdetect2

Probability 0,96

Protein sequence

MAEDIKIYGAKGGSQKQHQPVEQEDNLISLNKVKVLLAVADGEVDSNFSMKDLYLADVPVQNQDGSYNYEGVRAEFRAGTQYQDYIAGLDGANSEIQVSREIKNDTPHIIAVNNNQLSAIRVKLYWPRLVKQESNGDLNGTTCEYAIDLSVNGGAYQEYTRGVANGKTTTGYDRSIRVNLPAEFDSALVRIRKITPDSTSSTLVNGMQITTYQEVIDAKFRYPLTALVYVEFGSDLFPNGIPTISIKKRWKLIQVPTNYDPETRTYSGTWNGLFKMAWSNNPAWVLYDLVTNRRYGLDQRELGVEIDKWGLYEAAQFCDQMVPDGKGGLEPRYLCDMVVQNKAEAYTLIRDICSIFRGLTFYDGEKIGVVVDKPRNPSYIFTNDNVVNGLFSRTFASDKSLYTTANVQFDDVENNYQQDVEPVFELEATRRFGFNPVDLTAIGCTRRSEANRRGRWLLKTNLRSETISFTTGLEGMIPMIGEVIAVNDAAWSSNYQLNLSGRIESVQGLQVFTPFKVDAAPGDRILLNKPDGSPEARTIASVSEDGMTINLNTAFSFVAQPDTVFAIDKDNLALQQYVVTGIQKADSDGSDSFQYTITAVEYDPNKYDEIDYGVNIVDRPTSIVEPDRLSPPENLTVSSYSKVVQGLSVETMVIGWDKAPYAKTYNVQWRKENGNWINVPRTASAEVDIEGIYAGIYDVRVRSVSDTENVSAWSDIVTVSLTGKIGRPSAPTVITASTDEVFGIRVKWGFPEGSGDTAYTELQQVPDNGDGTYNPDNASLLTLLPYPAYEYWHTPIQPGKVIWYRARLIDRIGNTSDWSNFARGMSTDDANIINDYIKVDIEGSEGFKYLEQNAIQKNQDIQNQAESILQNALANDTDVRRMTKENGKRKAEYVQAVNLIADETQARVEALTQLKAQIDDEVVASITEVQTALATETEARTTADTALSARLGENEAALNQKLDAFSNATSTGVQYGISLGLKYNGQTYSSGMSMELVGTGGNVRSQFIFDANRFAISNGIGSGSGQWQLPFVVENGNVIIQSAVIGDGSITNAKIGDFIQSSNYVAGSTGWRIDKSGNAEIRGKLYANSGEFAFNGINNTVQINGNGITVNLPGGGRVVVGTF

Physico‐chemical properties

protein length:	1123 AA
molecular weight:	123837,42980 Da
isoelectric point:	4,72806
aromaticity:	0,09350
hydropathy:	-0,36260

Domain architecture

QDK00796.1

1 1123 aa

ATT 93–218 · ATT 341–489 · STR 628–725 · RBD 958–1086 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171 Coil IPR015406

IPR055385
ATT

IPR055385 IPR032876 IPR036116 Coil

IPR013783
STR

IPR013783

IPR003961
STR

IPR003961

QDK00796.1

11123 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0014
STR

DC_0014

QDK00796.1

11123 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	6	880	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	93	218	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	341	489	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR036116	STR	IPR036116	628	719	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR013783	STR	IPR013783	630	724	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR003961	STR	DC_0003	631	725	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
Coil	Unmapped	-	851	871	Coils	Coil	-	-	-	-
Coil	Unmapped	-	901	921	Coils	Coil	-	-	-	-
IPR015406	RBD	DC_0135	958	1086	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QDK00796.1

1 1123 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	509	509	0,9387
Central domain	510	1061	553	0,0409
C-terminal	1062	1123	61	0,6801

Note: Constraints were applied during segmentation.
Fixed 27 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Escherichia phage vB_EcoS-2862II [NCBI] · taxon 2576496

Uroviricota Caudoviricetes Drexlerviridae Veterinaerplatzvirus Veterinaerplatzvirus vv12210I

Host No host information

Genbank protein accession

QDK00796.1 [NCBI]

Genbank nucleotide accession

MK907273.1 [NCBI]

CDS location

range 11984 -> 15355
strand +

CDS

ATGGCTGAAGATATTAAGATTTATGGTGCTAAAGGTGGTAGCCAGAAGCAGCATCAACCAGTTGAGCAGGAAGACAACCTTATTTCATTAAACAAGGTTAAGGTGTTGCTTGCGGTTGCTGACGGAGAGGTGGATTCAAACTTCTCAATGAAGGATTTATACCTTGCTGACGTTCCGGTACAAAATCAGGATGGTAGTTACAACTATGAAGGTGTTCGCGCTGAGTTCCGTGCTGGCACGCAGTATCAGGACTATATCGCTGGCCTTGATGGTGCCAACTCAGAAATTCAGGTATCAAGGGAAATCAAAAACGATACCCCGCACATCATTGCGGTTAACAATAATCAGCTATCAGCGATTCGTGTAAAGCTATATTGGCCCAGACTGGTTAAGCAAGAGAGTAACGGTGACCTGAACGGGACAACCTGCGAGTATGCAATTGACCTTTCTGTTAATGGTGGAGCTTACCAGGAATACACTCGAGGAGTTGCTAACGGGAAGACAACAACTGGTTACGACCGCAGCATTCGTGTAAATCTTCCTGCTGAATTTGATAGCGCATTGGTTCGCATCCGTAAGATCACACCAGACTCAACAAGTAGCACCCTGGTTAACGGAATGCAGATCACAACCTATCAGGAGGTAATCGACGCTAAATTCCGATATCCGCTTACGGCCCTGGTTTATGTTGAGTTCGGCTCTGACCTTTTCCCTAACGGGATTCCAACAATCTCAATCAAGAAGAGGTGGAAGCTGATTCAGGTCCCAACTAACTACGACCCTGAAACCAGAACTTACAGCGGGACATGGAACGGTTTGTTCAAGATGGCATGGTCAAATAACCCAGCGTGGGTTCTTTATGACTTGGTGACAAACCGCCGATATGGTCTTGACCAGCGAGAGCTAGGTGTAGAGATTGATAAATGGGGGCTGTACGAAGCCGCGCAATTCTGCGACCAGATGGTTCCTGATGGTAAGGGTGGTTTAGAGCCTCGTTATCTTTGCGATATGGTTGTCCAGAATAAAGCTGAGGCTTACACGCTAATTCGTGATATCTGTTCAATCTTCCGTGGCCTAACCTTCTATGACGGTGAAAAGATTGGCGTCGTGGTTGATAAGCCTCGTAATCCATCTTACATCTTCACGAATGATAACGTTGTTAATGGATTGTTCAGTCGCACATTTGCCAGCGATAAGAGCCTTTACACTACTGCTAACGTCCAGTTTGATGATGTAGAGAACAACTATCAACAAGATGTAGAGCCGGTATTTGAATTAGAGGCAACTCGTCGTTTTGGATTTAACCCTGTAGATTTAACTGCGATTGGCTGTACTCGCAGAAGTGAAGCAAACAGACGTGGTAGGTGGCTCCTTAAAACCAATCTGAGAAGCGAAACTATTAGCTTCACTACCGGGTTGGAAGGCATGATTCCGATGATTGGAGAGGTTATTGCGGTTAATGACGCAGCATGGTCGAGCAACTATCAGTTAAACCTTTCCGGTCGCATTGAGTCAGTTCAGGGATTGCAGGTTTTTACCCCGTTTAAAGTTGACGCAGCTCCAGGTGACAGAATTCTTCTGAACAAACCCGACGGAAGCCCGGAGGCAAGAACTATTGCAAGCGTATCTGAGGATGGTATGACGATTAACCTGAACACGGCTTTCAGCTTTGTAGCTCAGCCTGACACTGTATTCGCAATCGATAAGGATAATCTGGCGCTTCAGCAGTATGTTGTGACCGGGATTCAAAAAGCGGATTCTGATGGTTCGGATTCATTCCAGTACACGATTACCGCAGTAGAGTATGACCCGAACAAGTATGACGAGATTGACTACGGCGTTAACATCGTTGATCGTCCGACTTCAATCGTAGAGCCTGACAGATTGTCGCCGCCTGAGAATTTAACAGTGTCAAGCTACAGTAAGGTTGTTCAGGGCTTGTCAGTCGAGACGATGGTAATTGGCTGGGACAAGGCTCCATATGCTAAAACCTACAATGTTCAGTGGAGAAAAGAGAATGGCAACTGGATTAACGTACCCAGAACAGCTAGCGCAGAGGTTGATATCGAAGGTATTTACGCAGGAATCTATGACGTTAGGGTTCGCAGCGTATCAGATACTGAAAACGTGTCTGCCTGGTCTGACATTGTAACTGTATCGCTAACTGGTAAGATTGGCCGCCCGTCTGCGCCTACAGTTATCACTGCATCAACTGATGAAGTATTTGGCATCCGTGTTAAATGGGGATTTCCTGAAGGATCTGGTGATACTGCTTACACTGAACTTCAGCAGGTTCCTGATAATGGTGACGGTACTTATAATCCTGATAACGCAAGTTTGCTGACTTTACTGCCTTATCCAGCCTATGAATACTGGCACACACCAATTCAGCCAGGAAAGGTTATCTGGTATCGCGCAAGATTGATTGACAGAATCGGTAACACATCTGATTGGTCTAATTTCGCAAGAGGCATGAGTACTGACGACGCCAATATTATCAATGATTACATCAAGGTTGATATTGAGGGCTCGGAAGGATTCAAATACCTCGAGCAGAATGCGATTCAAAAGAATCAGGACATTCAGAACCAGGCAGAATCAATCCTTCAGAACGCATTGGCTAATGACACTGATGTTCGTCGTATGACTAAGGAGAACGGCAAACGTAAGGCTGAATATGTTCAGGCTGTTAATCTCATAGCCGATGAAACTCAGGCGCGCGTAGAGGCTCTCACACAGCTTAAGGCGCAGATAGATGATGAAGTTGTAGCGTCGATTACTGAAGTTCAGACTGCATTAGCCACAGAGACAGAAGCAAGGACTACAGCAGACACGGCTCTATCAGCAAGGCTCGGTGAAAACGAGGCGGCTCTAAACCAGAAATTAGACGCATTCTCTAATGCCACATCAACTGGAGTGCAGTACGGAATTAGCCTTGGCCTGAAATACAATGGGCAGACTTATTCATCCGGCATGAGTATGGAGCTTGTTGGCACTGGTGGTAATGTTCGTAGTCAATTCATTTTTGACGCAAACAGATTCGCAATCAGTAACGGCATTGGTTCTGGTTCCGGTCAGTGGCAACTCCCCTTCGTTGTAGAGAACGGAAACGTAATCATCCAAAGTGCGGTAATTGGCGATGGCTCAATTACTAACGCGAAGATTGGTGACTTTATTCAGTCCAGCAACTACGTAGCAGGAAGCACAGGCTGGAGGATTGATAAGTCTGGTAACGCTGAGATTCGCGGTAAACTGTACGCCAACAGTGGTGAGTTCGCATTCAACGGAATAAATAATACGGTACAGATTAACGGAAACGGAATCACGGTTAACTTACCTGGAGGGGGAAGAGTTGTGGTAGGTACGTTCTAA

Title	Authors	Date	PMID	Source
Natural Occurrence of Escherichia coli-Infecting Bacteriophages in Clinical Samples	Pacifico,C., Hilbert,M., Sofka,D., Dinhopl,N., Pap,I.-J., Aspoeck,C., Carrico,J.A. and Hilbert,F.	2019	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature