Protein

View in Explore
Genbank accession
AGN12302.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,85
TSP
Evidence RBPdetect2
Probability 0,91
Protein sequence
MADKGFGVKKINLIGASGTPTLTSPNNLNLNAVNVAISTDVSIGGTCTAYEFSGATASWMVGNDGTDNYTFIGSGISTQVNDPELNLYKGQKYIFHNRSSGHPFRIQITPNGSVGGQYNTGVTNNDGSAQTDIIFEVPQDAPDTLYYQCTSHTGMGGKINIVGVASDTDTTLDGKTSGTNVYLGTTAGAANTTSPGNEVGIGYSALMQSTGRDSTGIGAYALQNVNGYYNTAVGSYAGFSTTAGISTASDNSFFGYASGYQNNGDGNSGIGLRTLFRNIGTENTALGMYSLQDNINGSYNVGMGVYAQYANVSGSNNTSAGWAALSSNVSGNFNLVLGSNALRTITSGLSNAAVGSDAGRYLTGGSSYNTLIGNYAVGIGTTGSYVTAVGASALAKNIANFNTATGAYASLQNTTGALNCSFGAYAGENTTTGSWNNAFGYAALNDNITGVSNNVMGYFALGVSTDASYNVAIGYESLKSLKTGDYNTAVGHRTLDLQTSGSYQTALGGFALGMSTTTISNTAIGYGSQLQTIEGNYNTAVGNNSLRENIEGDSNVAVGDNAIGIGTTGSYNVAVGAYALEKIIVTIVLQ
Physico‐chemical
properties
protein length:590 AA
molecular weight: 60301,99170 Da
isoelectric point:4,57079
aromaticity:0,09153
hydropathy:-0,12220

Domains

View on InterPro
Domain architecture
AGN12302.1
1 590 aa
STR 74–160 · STR 464–586 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
AGN12302.1
1 590 aa
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,4185
Central domain 156 579 425 0,9818
C-terminal 580 590 10 0,6674
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Prochlorococcus phage P-SSM5 [NCBI] · taxon 536454
Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes
Host No host information

Coding sequence (CDS)

Genbank protein accession
AGN12302.1 [NCBI]
Genbank nucleotide accession
HQ632825.1 [NCBI]
CDS location
range 114378 -> 116150
strand -
CDS
ATGGCAGATAAAGGATTTGGCGTAAAGAAAATTAATTTGATTGGGGCATCTGGTACTCCAACACTTACAAGTCCAAATAATCTAAATTTAAACGCAGTAAACGTTGCTATAAGTACTGATGTATCAATCGGTGGAACTTGTACTGCATATGAATTTAGTGGTGCTACTGCTAGTTGGATGGTTGGTAATGATGGAACAGATAATTACACTTTTATAGGATCAGGTATTTCAACTCAAGTAAATGATCCAGAATTAAATCTTTATAAAGGACAAAAATATATTTTTCATAATAGATCTTCAGGGCATCCATTTAGGATTCAAATCACTCCTAATGGGTCTGTAGGTGGACAATATAATACTGGTGTGACCAATAATGATGGTTCCGCACAAACAGATATTATATTTGAAGTTCCACAAGATGCACCTGATACTCTATATTATCAGTGTACATCGCATACTGGAATGGGTGGTAAGATTAATATAGTAGGTGTAGCTTCTGATACTGATACAACTTTAGATGGAAAGACTAGTGGTACAAATGTTTACTTAGGAACTACTGCTGGTGCAGCAAATACAACAAGTCCTGGTAATGAAGTTGGTATTGGTTACAGTGCATTAATGCAATCTACTGGCCGTGATAGTACTGGTATTGGAGCATACGCTTTACAAAATGTTAATGGATATTATAATACTGCAGTTGGATCTTACGCTGGATTTAGTACTACTGCTGGCATTAGCACTGCATCAGATAATAGTTTCTTTGGATATGCTTCTGGGTATCAGAATAATGGAGATGGTAATTCTGGAATTGGTCTTCGTACTCTCTTTAGAAATATTGGAACAGAGAATACTGCATTGGGTATGTATTCTTTACAGGATAATATAAATGGAAGTTATAATGTTGGAATGGGTGTTTATGCACAATACGCTAATGTGAGTGGATCAAACAATACTTCGGCTGGTTGGGCTGCATTATCCTCTAATGTGAGTGGTAATTTTAATTTGGTTTTAGGGTCGAATGCATTAAGAACAATTACCTCTGGACTTTCAAATGCTGCTGTAGGTTCTGATGCAGGAAGGTATTTAACTGGTGGATCTAGTTATAATACATTAATTGGTAATTATGCTGTTGGTATTGGTACTACTGGAAGTTATGTCACTGCCGTTGGAGCAAGTGCATTAGCTAAGAATATAGCAAATTTTAACACAGCAACAGGTGCTTATGCATCGCTACAGAATACAACAGGAGCTTTGAATTGTTCTTTCGGTGCTTATGCAGGAGAAAATACCACGACAGGAAGTTGGAATAATGCGTTTGGATATGCTGCTTTAAATGATAATATAACAGGTGTATCTAATAATGTAATGGGATATTTCGCACTTGGAGTTTCTACTGATGCTAGTTATAATGTTGCAATCGGATATGAGAGTTTAAAATCTCTAAAAACTGGTGATTATAATACTGCTGTAGGACATAGGACACTTGATCTTCAAACTAGTGGAAGTTATCAAACTGCTCTTGGTGGATTTGCATTAGGTATGAGTACTACGACCATATCAAATACTGCTATTGGATATGGTAGTCAACTTCAGACTATAGAAGGTAATTATAATACTGCGGTTGGAAATAATAGTTTACGGGAAAATATTGAGGGTGATAGTAATGTTGCTGTGGGAGATAACGCAATTGGTATTGGAACGACTGGAAGTTATAATGTTGCAGTTGGTGCTTATGCATTAGAAAAAATAATAGTAACTATAGTACTGCAGTAG

Genome Context

Tertiary structure

AGN12302.1
ESMFold structure
Source ESMFold
pLDDT 84.1
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM5 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank