Phage RBP Database

Genbank accession

XYH46722.1 [GenBank]

Protein name

short tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,98

Protein sequence

MSNNTINHVSDKSIYVTFDPTGTDWPDTITNVQDALEKIGSWARTDTGLPIATTSVRGIAQIATEADIDAGTDNTKIVTPKLLAYRMQNPKASQTVWGYTKYSTDAESTTVTNDASSITPRSLNYVFNNRKGTESVWGSSKIATTAQAVAGTDNTVTMTPLKVKQAIASLVPVQSSATESSQGLVQLATVAQVQAGTIREGYAISPYTFIRLTATESNLGVIRIASQAEANAGTDDTKAITAKKLINTRATGSQFGVVKLATTVGYVANTALSSNAAVLPSDRNAVINGSLYENSAIYNNKYQTWTDLDWHFPVGAIVMTGFQTDHGSLYICDGRSLNKNNYPLLFERIGYTFGGGGDWFNLPDCRGVAVRGHDRGRGLNPNRGYGTYEGDMLGWHEHPLQLIYQNGGNIPKWQAVYELKSAEKNDQSARVFDSSITKATGVGGEETRMKNIALNYVIRVL

Physico‐chemical properties

protein length:	461 AA
molecular weight:	49841,02380 Da
isoelectric point:	7,01856
aromaticity:	0,08243
hydropathy:	-0,31996

Domain architecture

XYH46722.1

1 461 aa

STR 242–300 · ATT 301–368 · STR 369–460 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

SSF69349
STR

SSF69349

IPR037053
ATT

IPR037053

SSF88874
STR

SSF88874

IPR011083
ATT

IPR011083

XYH46722.1

1461 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0176
STR

DC_0176

XYH46722.1

1461 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
SSF69349	STR	SSF69349	242	321	Merged direct domain	SSF69349	Central	Low	Positional only	153 proteins / 153 hits
IPR037053	ATT	IPR037053	301	366	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
SSF88874	STR	SSF88874	304	460	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR011083	ATT	DC_0235	315	368	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XYH46722.1

1 461 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	371	371	0,7033
Central domain	372	450	80	0,0008
C-terminal	451	461	10	0,9963

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage vB_KpnP_KM3 [NCBI] · taxon 3446106

Viruses

Host

Klebsiella pneumoniae [NCBI] · taxon 573

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

XYH46722.1 [NCBI]

Genbank nucleotide accession

PV833086.1 [NCBI]

CDS location

range 6200 -> 7585
strand +

CDS

ATGAGTAACAATACAATCAACCACGTAAGTGATAAATCCATTTACGTGACATTTGACCCAACAGGTACTGATTGGCCTGATACCATAACCAACGTACAAGATGCGTTGGAAAAAATAGGTAGTTGGGCGCGTACTGATACTGGGCTTCCTATCGCAACAACTTCTGTTCGTGGTATTGCTCAGATCGCAACCGAAGCTGATATTGACGCTGGCACGGATAACACTAAGATTGTTACTCCGAAACTGTTAGCATATCGTATGCAGAACCCTAAAGCATCACAAACCGTATGGGGTTATACGAAGTATTCGACTGATGCGGAATCTACAACCGTAACTAACGATGCATCGTCTATTACTCCGCGATCTCTGAACTATGTGTTCAATAACCGTAAAGGTACAGAATCGGTTTGGGGTTCTTCTAAAATTGCTACCACTGCACAGGCGGTTGCTGGTACAGATAACACTGTAACTATGACTCCGCTTAAAGTCAAGCAAGCGATCGCGTCTCTGGTTCCTGTTCAGTCAAGTGCGACCGAAAGCTCGCAAGGTTTGGTACAACTGGCAACAGTTGCACAGGTTCAGGCTGGTACGATCCGTGAAGGGTATGCAATTTCACCTTATACGTTTATTCGTTTAACTGCAACTGAAAGCAACTTGGGCGTTATTCGTATCGCATCACAGGCAGAAGCAAACGCGGGTACTGATGACACCAAAGCGATTACTGCGAAAAAATTAATCAATACCCGTGCAACTGGATCTCAGTTCGGTGTTGTTAAATTAGCAACAACTGTTGGTTATGTGGCAAACACTGCACTTTCTTCAAACGCTGCGGTATTACCTAGTGATCGAAATGCGGTAATTAACGGTTCTCTTTATGAGAATAGCGCAATATATAACAACAAATATCAGACGTGGACAGATCTTGATTGGCATTTCCCAGTAGGTGCTATTGTCATGACTGGTTTTCAGACTGACCACGGTAGTTTGTATATTTGTGATGGTCGCTCACTGAATAAAAATAACTATCCGTTACTTTTTGAGCGTATAGGTTATACATTTGGTGGTGGCGGTGATTGGTTTAACCTTCCAGATTGTCGAGGCGTTGCAGTACGTGGTCATGACCGTGGACGCGGATTAAACCCTAATCGTGGGTATGGTACATATGAAGGCGATATGTTGGGCTGGCACGAACACCCATTACAGCTTATCTACCAGAACGGCGGTAATATTCCGAAATGGCAAGCAGTTTATGAACTTAAAAGCGCCGAGAAAAACGATCAGAGTGCTCGCGTGTTTGATTCTTCCATAACTAAAGCTACTGGTGTGGGCGGAGAAGAAACCCGCATGAAAAACATCGCATTAAACTACGTAATTCGCGTATTATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)