Phage RBP Database

Genbank accession

QMV32935.1 [GenBank]

Protein name

central tail fiber J

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,72

TF

Evidence RBPdetect2

Probability 0,99

Protein sequence

MRNIIGYGGGKGGGGGSTPTEAPDSLHSVAYARVLDLVSEGEIAGLVNGLQSIYLEGTPLANADGSLNFQNVAVDYRPGSQDQEVIPGFPSVESESAVGVELTATMPWVRAIANTQLSAVRVQLSVPALSRADTSSGNINGYRVEYAIDLAVDGGALQQVLATAFDGKTTSKYTRTHRIELPRAKTGWTIRVRRITPNANSGTIADVTRIESIAEVIDAKLRYPNSALIGVRIDARQFSSVPTRSYHLRGRIIRVPSNYDPLTRTYTGLWDGTFKAAYSNNPAWVFYDIVLHKRCGLGDRVSADMVDKWALYQIGQYCDELVPDGRGGQEPRFTCNCYLQQRNDAYPVLQDLASVFRGMAYWASSNVVAVADMPASASYLFHPGNVVDGQFTYAGSARRARKTVALVSWNDPGDQYRAKVEHVEDGDGIARYGIQQTEVTAFGCTSQGQAHRVGQWILLTSRLETETVSFKVGLDAAVVMPGAIIEVADPVRAGRANGGRVRSADGRTVVVDRPVVVREGDTLLLNLPDGTAQRRTISRVDGQGLTVSADWSQPVQAEAVWSVESADLKTQLFRVVSVTESDGLTFDISALEYNQSKFSAIDNGTRIEARPVSVLPPSVQPAPTDVTLATYSVVDQGIATTTMMVAWQQAASAVAYTVEWRRDNGEWVTAGRTGSQSLEVRNIYAGTYVARVRAINALDVASLPAYSAETRLTGKTSPPPVVGTLIATAIVFGIRLDWAFPTGPLDVERTELWWSKTPDRASATKLGDFAFPANTHTLMGLAAGATFYFWARLVDKSGNVGAWYPSGNGVLGMSSDQASDILSYMKGQIGKTQLAGDLLSAVDSIDPPMAGSDEDFAGDGTVYAGIVSTQSVLEEANRAIAQQVTTVQATVAQSSAAVQVAQQAVAEQGGRLAAMYTIKTQIAANGRTYLAGIGVGVENDKGVIESQVLIAADRFAVLHPNGDSVLTPFVIQGGQVFMDSAFIADGTITSAKIGDSIQSSNFVAGQTGWRLSKSGLFENNGNGAGGRRVDTSALTQIYDSAGTLRVRLGVW

Physico‐chemical properties

protein length:	1051 AA
molecular weight:	112315,63380 Da
isoelectric point:	5,44793
aromaticity:	0,07897
hydropathy:	-0,10124

Domain architecture

QMV32935.1

1 1051 aa

ATT 92–219 · ATT 341–501 · STR 621–712 · RBD 898–1028 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171 IPR015406

IPR055385
ATT

IPR055385 IPR032876 IPR013783

IPR003961
STR

IPR003961

IPR036116
STR

IPR036116

QMV32935.1

11051 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0014
STR

DC_0014

QMV32935.1

11051 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	8	849	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	92	219	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	341	501	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR013783	STR	IPR013783	621	712	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR003961	STR	DC_0003	621	697	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR036116	STR	IPR036116	633	701	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR015406	RBD	DC_0135	898	1028	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QMV32935.1

1 1051 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	537	537	0,8187
Central domain	538	999	463	0,0416
C-terminal	1000	1051	51	0,7021

Note: Constraints were applied during segmentation.
Fixed 52 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Ralstonia phage Dina [NCBI] · taxon 2759732

Uroviricota Caudoviricetes Dinavirus

Host No host information

Genbank protein accession

QMV32935.1 [NCBI]

Genbank nucleotide accession

MT740734.1 [NCBI]

CDS location

range 29215 -> 32370
strand +

CDS

ATGCGCAACATCATCGGCTACGGTGGCGGCAAGGGCGGCGGCGGCGGCAGCACGCCAACCGAAGCGCCGGACAGCCTGCACTCGGTCGCCTATGCGCGCGTGCTGGATCTCGTTTCCGAGGGCGAGATCGCGGGCCTGGTCAACGGCCTGCAGAGCATCTATCTCGAGGGCACGCCGCTGGCCAACGCCGACGGCTCGCTCAATTTTCAGAATGTGGCCGTCGACTACCGCCCGGGCTCGCAGGATCAGGAGGTCATTCCCGGCTTCCCCTCGGTGGAGAGCGAGAGTGCTGTCGGTGTCGAGCTGACCGCGACCATGCCCTGGGTGCGTGCGATCGCGAACACGCAACTGTCGGCGGTGCGCGTGCAGCTGTCGGTGCCGGCGCTGTCGCGAGCGGACACCAGCAGCGGGAATATCAATGGCTACCGGGTCGAATATGCGATCGACCTGGCTGTCGACGGCGGTGCGCTGCAGCAGGTGCTAGCCACCGCGTTCGATGGCAAGACGACCAGCAAGTACACGCGCACGCACCGCATTGAACTGCCGCGCGCGAAAACCGGCTGGACGATCCGCGTGCGCCGCATCACGCCCAACGCGAACAGCGGCACGATCGCCGACGTGACACGAATCGAATCGATCGCCGAGGTGATCGACGCCAAGCTGCGTTACCCGAATTCGGCGCTGATCGGCGTGCGCATCGATGCGCGCCAGTTCAGCAGCGTGCCTACCCGGTCGTATCACCTGCGCGGCCGTATCATCCGCGTGCCGAGCAACTATGACCCGCTCACCCGTACCTACACGGGGCTGTGGGATGGCACGTTCAAGGCGGCCTACAGCAACAACCCCGCCTGGGTGTTCTATGACATCGTGCTGCACAAGCGGTGCGGGCTGGGCGACCGCGTAAGCGCGGACATGGTCGACAAGTGGGCGCTGTACCAGATCGGCCAATACTGCGACGAGTTGGTGCCGGACGGGCGGGGCGGGCAGGAGCCCCGCTTTACCTGCAATTGCTACCTGCAACAGCGCAACGATGCCTACCCCGTCTTGCAGGACCTGGCCAGCGTGTTCCGCGGCATGGCTTACTGGGCGTCGAGCAACGTGGTCGCCGTGGCGGACATGCCGGCGTCCGCTTCGTACCTTTTCCACCCAGGCAACGTGGTCGATGGCCAGTTCACCTACGCCGGCAGCGCCAGGCGGGCCCGGAAGACGGTGGCGCTTGTCTCATGGAACGATCCGGGCGACCAGTACCGCGCCAAGGTCGAGCATGTCGAGGATGGCGACGGCATCGCGCGATACGGCATCCAGCAGACCGAGGTGACCGCGTTCGGCTGCACCTCCCAGGGCCAGGCGCATCGTGTAGGTCAGTGGATCCTGCTGACCAGTCGCCTGGAAACCGAGACGGTCTCATTCAAGGTCGGGCTCGACGCTGCAGTAGTCATGCCGGGCGCGATTATCGAGGTCGCGGACCCGGTGCGCGCGGGCCGGGCCAACGGTGGCCGCGTCCGCTCGGCCGATGGCCGGACGGTGGTGGTCGACCGGCCGGTGGTGGTCCGGGAAGGCGATACCCTGCTGCTGAACCTGCCGGACGGCACCGCGCAGCGGCGGACCATTTCCCGCGTCGACGGGCAGGGCCTGACCGTCTCGGCCGACTGGTCGCAGCCGGTGCAGGCGGAGGCGGTGTGGTCGGTCGAGAGCGCGGATCTGAAAACCCAGCTGTTCCGGGTGGTGTCGGTAACGGAAAGCGACGGCCTGACGTTCGACATCTCGGCGCTCGAGTACAACCAGTCGAAATTCTCGGCCATCGACAACGGCACGCGCATCGAGGCGCGCCCGGTGTCGGTGCTGCCGCCGTCGGTGCAGCCGGCGCCGACCGATGTGACGTTGGCCACGTACAGCGTTGTCGATCAGGGCATTGCCACCACGACGATGATGGTCGCGTGGCAGCAGGCCGCCAGCGCGGTCGCCTACACCGTCGAATGGCGGCGGGACAATGGCGAATGGGTGACGGCCGGCCGCACGGGCTCGCAGAGCCTCGAGGTGCGCAACATCTACGCCGGCACCTACGTTGCTCGGGTGCGCGCAATCAACGCGCTTGACGTGGCGTCGCTGCCGGCCTATTCGGCGGAGACCCGGCTCACCGGCAAAACCTCGCCGCCGCCGGTGGTGGGCACGCTGATCGCCACAGCCATCGTGTTCGGGATCCGGCTGGACTGGGCATTCCCGACCGGTCCGCTCGATGTGGAGCGGACCGAGCTCTGGTGGAGCAAAACGCCGGATCGCGCGTCGGCGACCAAGCTTGGCGATTTCGCGTTCCCCGCCAACACGCACACGCTGATGGGGCTGGCGGCCGGCGCGACGTTCTATTTCTGGGCTCGCTTGGTCGACAAATCCGGCAATGTCGGCGCGTGGTACCCGTCCGGCAATGGCGTGCTTGGCATGAGCAGCGACCAAGCCTCCGACATCCTCAGCTACATGAAAGGCCAGATTGGCAAAACGCAGCTCGCTGGTGACCTGCTGTCGGCGGTTGATTCGATTGATCCGCCGATGGCGGGCAGCGATGAGGATTTTGCCGGCGACGGCACCGTCTACGCCGGGATCGTGTCGACGCAGTCGGTGCTGGAGGAGGCCAACCGCGCGATCGCGCAGCAGGTGACGACCGTGCAGGCTACGGTCGCGCAGAGCAGTGCGGCGGTGCAGGTGGCGCAGCAGGCGGTCGCCGAGCAGGGTGGCCGGCTGGCGGCGATGTACACCATCAAGACGCAGATCGCTGCCAACGGCCGGACCTACCTGGCCGGGATCGGCGTCGGCGTCGAGAACGACAAGGGTGTCATCGAAAGCCAGGTGCTGATCGCTGCGGATCGATTCGCGGTGCTGCATCCGAACGGTGACAGCGTGTTGACGCCGTTCGTGATACAGGGTGGGCAGGTGTTCATGGATTCGGCGTTCATCGCTGACGGCACGATCACCAGCGCCAAGATCGGCGACTCGATCCAGTCGAGCAATTTCGTTGCGGGGCAGACTGGGTGGAGGCTCAGCAAGTCGGGCCTGTTCGAGAACAACGGCAACGGCGCCGGCGGCCGGCGCGTCGATACCAGCGCGCTCACGCAGATCTATGACAGCGCCGGCACCCTGCGGGTGCGCCTGGGGGTGTGGTGA

Title	Authors	Date	PMID	Source
Ralstonia phages	Trotereau,A., Boyer,C. and Torres-Barcelo,C.	2021-03-08	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature