Phage RBP Database

Genbank accession

YP_009903057.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,58

Protein sequence

MALYREGKAAMAADGTVTGTGTKWQSSLSLIRPGATIMFLSSPIQMAVVNKVVSDTEIKAITTKGAVVASTDYAILLSDSLTVDGLAQDVAETLRYYQSQETVIADAVEFFKNFDFDSLQNLANQVKQDSESAGASATAAAASESAAKTSETNSKASEQAALTARQQAGSARDQTQNLYNQTVDLVAGVQAQDKLPVSPGGSRAWMKIANVKNAGQSNCFAQFIIGGGANFGSANLPVDIFSISGRGLPDTLTSNNIDANFTQCALIAATSSTSRLKLGVVKNTDGSFDVYLLCPNGYFPVMWLNRLNVQSNNGLITGPIIDRTGYSWITTEPAGIVYNSPSDYLMANDSTIPRTNVANTFSQPQAISVPGGNATLTLNGCVVRANNNNAIVYSIPEDGQGMYFRPNGDLNSAKQVVFDASNFTVTGLNASFSNAVTMSSTLRVNGSSNLRGGVDVTASQGLPLKETTATNGIGVNFIGSNVTECSFGIENTAGGSAVFHNYARGASNSSTKNNQLLGGYGSRPWLGSDYTEHSNAALHFLGAGDTSGTNHGGWIRLLVTPKGKTISDRVPAFRLSDNGDLWLVPDGAMHPDLGLVRSFETLNAVVPAFNAPTNQDGRGLKLVGSPAPEINMIAPRGSNTSAPAIRAMWCDGSLSDETRYIGAVQNGSTFYLGASGHDGEKFDSMRGSVTIKANAGWGKTSTPTQVVFETCESGSITRMPRWGVDHNGTLMPMADNRYNLGWGSGRAMNIYAVNGTINTSDARLKNDVRTMSDPETEAAKAIAKEIGFWTWKEQADMNDVREHCGLTVQRAMEIMESHGLKPFDYAFICYDKWEETTVVDSYGPANEDGSENPIYKVVPAGDRYSFRLDELNMFIAKGFEARLSAIEEKLGM

Physico‐chemical properties

protein length:	892 AA
molecular weight:	95079,93400 Da
isoelectric point:	5,17413
aromaticity:	0,07960
hydropathy:	-0,23935

Domain architecture

YP_009903057.1

1 892 aa

RBD 746–892

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR036388
RBD

IPR036388

cd10144
CHP

cd10144

IPR030392
CHP

IPR030392

IPR030392
CHP

IPR030392

YP_009903057.1

1892 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0313
STR

DC_0313

YP_009903057.1

1892 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR036388	RBD	IPR036388	746	892	Merged direct domain	Winged helix-like DNA-binding domain superfamily	C-terminal	Low	Positional only	96 proteins / 96 hits
cd10144	CHP	DC_0088	760	882	InterPro cluster	cd10144	C-terminal	High	Text match	3502 proteins / 3959 hits
IPR030392	CHP	DC_0088	760	890	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits
IPR030392	CHP	DC_0088	760	820	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009903057.1

1 892 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	243	243	0,7482
Central domain	244	442	200	0,5996
C-terminal	443	892	449	0,8866

Note: Constraints were applied during segmentation.
Fixed 52 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage Skenny [NCBI] · taxon 2580407

Uroviricota Caudoviricetes Drexlerviridae Webervirus skenny

Host

Klebsiella pneumoniae [NCBI] · taxon 573

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YP_009903057.1 [NCBI]

Genbank nucleotide accession

NC_049841 [NCBI]

CDS location

range 29308 -> 31986
strand -

CDS

ATGGCACTATACAGAGAAGGCAAGGCGGCTATGGCCGCAGACGGAACCGTTACCGGGACTGGCACAAAATGGCAATCATCGCTTTCGCTTATCCGCCCTGGCGCGACGATTATGTTTTTGTCGTCTCCGATTCAAATGGCCGTCGTAAACAAGGTGGTCAGCGACACTGAAATTAAAGCCATCACCACAAAAGGCGCTGTCGTAGCGTCTACCGATTACGCGATCCTGTTAAGCGACTCGCTAACCGTTGACGGCCTGGCGCAAGATGTTGCCGAAACTCTGCGCTACTATCAGTCACAGGAAACCGTAATTGCGGATGCAGTCGAGTTCTTCAAGAACTTTGATTTCGATTCCCTGCAAAATCTTGCCAATCAGGTTAAGCAAGATTCTGAATCTGCTGGCGCAAGCGCTACGGCTGCGGCGGCGTCTGAAAGCGCTGCAAAAACTTCAGAAACGAACTCTAAGGCTTCGGAGCAAGCGGCGCTAACAGCACGGCAACAAGCCGGGTCGGCAAGGGATCAGACCCAAAACCTTTATAACCAGACCGTAGATCTTGTGGCTGGAGTTCAAGCTCAGGATAAGCTGCCCGTCTCGCCGGGTGGTTCTCGTGCGTGGATGAAGATTGCCAACGTTAAGAACGCTGGACAGTCAAACTGTTTTGCGCAATTTATTATTGGTGGCGGCGCTAACTTTGGTTCGGCAAATCTCCCGGTAGATATCTTTTCTATTTCTGGCCGTGGTCTTCCCGATACGCTAACCAGTAATAATATTGACGCCAACTTTACTCAATGCGCACTGATTGCCGCAACCAGTAGCACATCACGTTTGAAGTTGGGGGTTGTGAAAAACACTGACGGATCTTTTGATGTTTATTTGCTCTGTCCTAACGGTTATTTTCCCGTTATGTGGTTAAACCGTTTGAACGTGCAATCTAATAATGGGTTGATTACCGGGCCGATCATCGATCGCACTGGTTATTCGTGGATTACCACGGAGCCAGCCGGGATTGTATATAATTCACCGTCTGATTATTTGATGGCGAACGATAGCACGATCCCGCGAACCAATGTGGCCAACACGTTCAGCCAGCCGCAGGCTATCAGCGTGCCGGGCGGAAACGCTACGCTGACCCTGAACGGTTGCGTAGTTAGGGCCAACAATAATAATGCGATCGTGTACTCCATCCCTGAAGATGGTCAGGGAATGTACTTTCGCCCTAATGGTGATCTGAATAGCGCGAAGCAGGTTGTTTTTGACGCATCAAACTTTACTGTTACCGGGTTGAATGCCAGCTTTAGTAATGCCGTTACAATGTCAAGCACGCTACGAGTTAACGGATCTTCTAACCTTCGAGGCGGCGTGGATGTTACCGCTTCTCAGGGCTTGCCACTGAAGGAGACGACCGCAACAAACGGGATCGGCGTTAACTTTATTGGCAGCAATGTAACGGAATGCTCTTTCGGGATTGAAAATACGGCTGGCGGATCTGCTGTATTCCATAACTATGCACGCGGCGCGTCAAATAGCTCCACAAAGAACAACCAGCTTTTAGGCGGTTATGGATCTCGCCCGTGGTTAGGTTCTGACTACACGGAGCACAGTAACGCGGCCTTGCATTTCCTTGGCGCTGGCGATACATCTGGAACCAATCACGGCGGCTGGATTCGCTTGCTTGTCACCCCTAAAGGTAAGACGATTAGCGATAGGGTTCCGGCGTTCAGGCTGTCAGATAACGGAGATCTTTGGTTGGTTCCGGACGGTGCTATGCACCCGGATCTTGGGCTTGTGCGTAGCTTTGAGACGTTGAACGCAGTCGTTCCTGCCTTTAATGCACCAACTAACCAGGATGGTCGCGGGTTGAAACTTGTTGGTTCTCCAGCGCCAGAAATTAACATGATCGCGCCGCGTGGCTCTAACACATCGGCGCCAGCGATTCGCGCTATGTGGTGCGATGGCAGTCTGTCCGATGAAACTAGATATATTGGCGCTGTACAAAACGGTTCGACTTTCTATCTCGGTGCGTCTGGTCATGATGGCGAGAAGTTCGACTCAATGCGTGGTAGCGTGACAATCAAGGCAAATGCGGGCTGGGGTAAAACTTCAACTCCAACACAGGTTGTTTTCGAGACGTGCGAATCTGGAAGTATTACTCGAATGCCGCGATGGGGGGTTGACCATAACGGAACGTTAATGCCGATGGCGGATAACAGATACAACTTAGGTTGGGGATCTGGCCGGGCAATGAACATTTACGCCGTAAACGGAACTATCAACACCTCCGATGCACGGTTGAAAAATGATGTTCGAACCATGAGCGATCCTGAAACCGAAGCGGCCAAAGCTATTGCGAAGGAGATCGGGTTCTGGACGTGGAAAGAGCAAGCCGACATGAACGACGTGCGCGAGCACTGCGGTTTAACGGTTCAGCGCGCAATGGAGATTATGGAAAGTCACGGATTAAAACCGTTTGATTATGCTTTTATCTGTTACGATAAATGGGAAGAAACAACCGTTGTTGACAGCTACGGCCCGGCGAATGAGGACGGTTCAGAGAACCCGATCTACAAAGTGGTTCCGGCTGGCGACCGTTATTCGTTCCGACTCGATGAATTAAACATGTTTATCGCGAAGGGATTCGAAGCGCGTCTTTCAGCAATTGAGGAGAAGTTAGGTATGTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)