Phage RBP Database

Genbank accession

QPI18077.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,89

TF

Evidence RBPdetect2

Probability 0,99

Protein sequence

MAKPKDPIVVWAAQDVNLPGTGRPNKSKPIDDLLAKGYDKGQKPAAEEFNYILNMSSGWINWIVNEKFPELEAEIARLLAELEARINAQLLIIRQDIATLKQDVADLRRYVDQKVLELKQEIQGVRNDLNKLRQDFDAAIAQVNGRIDDLEPRLVPIGAVIPWPGGTVPNGWLECNGQVFNTGQNPKLYSVLGRNVVPDYRGLFLRGWAHGSNAFDPDAGRALGSVQGDAIRNIQGRFAADHGETWIIGRFNEGPFYDSGVAGNGDTGSKGGETRQIRFDASRVVPTAPENRPKNVAVMYIIKTDQAQSSGGNSPTGIVVSPDTITNRVGYTVKATANVLPASLAGQYPVSWASQNAAVATVDGSGNIRLVGPGETNIIASISTGMNVQIRVTSYSVLTSISIGDPGQIEVDQSKLLVITKNPGSANEPLQYLSNNSGVATVNDAGYVTGVSPGTATITVRGTLSGVSSTRSVTIIAAAVEEIVQDNRLGAQGSYIPPGNEISWTFRAPAGCALTGIIVQDVGSNSADNIGGVYYKPIQKKINGVWVTITG

Physico‐chemical properties

protein length:	551 AA
molecular weight:	58755,44100 Da
isoelectric point:	5,72291
aromaticity:	0,06534
hydropathy:	-0,19383

Domain architecture

QPI18077.1

1 551 aa

ATT 155–206 · STR 207–303 · STR 314–395 · STR 397–478 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:1.20.58.130
Unmapped

G3DSA:1.20.58.130 SSF88874 G3DSA:2.60.40.1080 IPR003343

Coil
Unmapped

Coil IPR051934 IPR003343 G3DSA:2.60.40.1080

IPR037053
ATT

IPR037053 IPR008964 IPR003343

IPR011083
ATT

IPR011083 IPR003343 IPR008964

QPI18077.1

1551 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0413
STR

DC_0413

QPI18077.1

1551 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:1.20.58.130	Unmapped	-	88	154	Gene3D	None	-	-	-	-
Coil	Unmapped	-	115	142	Coils	Coil	-	-	-	-
IPR051934	Unmapped	-	150	242	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
SSF88874	STR	SSF88874	154	303	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	155	206	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	158	204	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	314	395	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR003343	STR	DC_0008	314	393	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR008964	RBD	IPR008964	316	392	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR003343	STR	DC_0008	316	380	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR003343	STR	DC_0008	397	474	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	398	478	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR003343	STR	DC_0008	408	460	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR008964	RBD	IPR008964	415	461	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits

Proteins with similar domain architecture

Phage

Pectobacterium phage POP15 [NCBI] · taxon 2759209

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Pectobacterium carotovorum subsp. carotovorum [NCBI] · taxon 555

Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Pectobacterium

Genbank protein accession

QPI18077.1 [NCBI]

Genbank nucleotide accession

MT560059.1 [NCBI]

CDS location

range 25876 -> 27531
strand +

CDS

ATGGCTAAACCAAAGGACCCGATTGTAGTATGGGCGGCGCAGGATGTCAACCTTCCGGGGACAGGCCGACCAAACAAATCTAAACCTATTGACGACTTGCTCGCCAAGGGTTACGATAAGGGTCAGAAACCTGCTGCTGAAGAGTTCAACTACATTCTGAACATGTCTTCCGGCTGGATCAACTGGATTGTGAACGAAAAGTTCCCGGAACTGGAAGCGGAAATCGCCCGTCTTCTGGCTGAACTGGAAGCCCGCATCAACGCCCAGTTGCTCATCATCAGACAAGATATTGCAACCCTGAAGCAGGATGTTGCGGATCTTCGCCGCTACGTGGATCAAAAGGTCTTGGAACTGAAGCAGGAGATCCAAGGCGTCCGTAATGACCTGAACAAGCTCCGCCAAGATTTCGATGCCGCTATTGCCCAAGTTAACGGACGTATCGACGATCTGGAACCTCGCCTCGTGCCAATCGGTGCCGTTATTCCTTGGCCCGGCGGTACAGTTCCTAACGGGTGGTTGGAGTGTAACGGTCAGGTATTCAATACCGGGCAGAACCCGAAACTGTACAGCGTCCTTGGGCGTAACGTTGTTCCGGACTACCGTGGCCTGTTCCTGCGTGGTTGGGCACATGGCTCCAACGCCTTTGACCCAGATGCGGGTCGTGCTCTCGGCTCCGTTCAGGGTGACGCAATTCGAAACATCCAAGGTCGCTTTGCGGCGGACCACGGTGAAACGTGGATCATTGGTCGTTTCAACGAAGGTCCGTTCTATGATTCAGGTGTAGCTGGCAACGGCGATACCGGGTCCAAAGGTGGAGAGACACGTCAGATTCGTTTCGACGCATCACGTGTGGTTCCAACGGCCCCTGAGAACCGTCCAAAGAACGTCGCCGTGATGTATATCATCAAGACCGACCAGGCTCAGTCTTCCGGCGGCAACTCACCGACTGGGATCGTGGTTTCTCCAGACACAATCACCAACCGTGTGGGATATACCGTGAAGGCAACAGCTAACGTGCTGCCAGCCTCGCTCGCAGGTCAGTACCCAGTGTCTTGGGCAAGCCAGAACGCCGCCGTTGCGACGGTTGACGGCTCCGGCAACATCCGCCTCGTAGGACCTGGTGAAACGAACATCATTGCCTCCATCTCTACCGGGATGAACGTGCAAATTCGTGTGACCAGCTACTCTGTCCTGACCAGTATTTCAATCGGAGATCCGGGCCAGATCGAGGTTGACCAGTCCAAGCTCTTGGTTATTACCAAGAACCCAGGTAGCGCCAACGAACCGCTCCAGTACCTGTCCAACAACTCTGGTGTTGCGACGGTGAACGACGCAGGGTACGTAACTGGTGTCTCCCCTGGAACGGCAACCATCACTGTTCGTGGTACTCTGTCTGGTGTATCGAGCACTCGTTCAGTGACCATCATTGCAGCAGCGGTGGAAGAGATTGTCCAAGATAACCGCCTCGGTGCCCAAGGGTCTTACATCCCACCGGGTAACGAGATTAGTTGGACATTCCGTGCGCCAGCGGGGTGCGCCCTGACAGGAATCATCGTTCAGGACGTTGGATCTAACTCTGCCGATAACATTGGTGGCGTTTATTACAAGCCCATCCAGAAGAAAATCAACGGTGTCTGGGTAACTATCACGGGGTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)