Phage RBP Database

Genbank accession

YP_008130361.1 [GenBank]

Protein name

tail protein

RBP type

TSP

Evidence RBPdetect

Probability 0,90

Protein sequence

MALVIHYTRNENGGFNTSQHYTEPMLFVTERIPDGVPFTIYRDSVGEDNNVTENFDALREPGIFHIIEGAGGGVVSGAFKLLGAVLSPIMKLLTPSTAAAQSFSNVQGESPNNSLTDRNNKPRPYERVYDICGTVQSIPNNLMTTYSVFNSSGRKVEYGYYCVGRSYLDISVSGVTDGDTLLQNIPGASAYIYGPNTSPNSGSPQLAIGDPIDQGLYSTVSANEVDGQTLKAPNDLSSRMTDGATAVYSGGLGTITDPSGGADFSAYIKVGSNVVFKNVFVDGVADLNAIYVVTDVSSVSITVNPSPKLDQWVNVGGTPRPLKLSDDPIVEPYDTKEASFTPWVSITRLQPERLLINVSAPNGMYLDWGAGKLQLGTTFEAEYQLLDELNNPYGPVYAQQATVTGKSSQETGATLYAVLPVASKVRVRVRRVTPFQFWYNGVVVDELKYNELFAQVTDYTPHYGNITTVHTARLQTVRATAVKQPQLKILCTEMVQKYLGAGQFDATWTPNTQAVQSMIRLLRDPVVGGLDLTTANMDALLATQTEIETYFNDVRAGQFCYTFDTYTTTAQDIIEAIAEAVFCRAYREGKSILLDFDRPRVGPEMVFTHRSKIPGQEKWTRSFDDQSSYDSLKFSYIDPKKNTKETITIPADGGRKTYTYDSKGVRNYQQAYWLAHRRYQMIKLKRISVDFSATEEGSLVRPGRAISVVKGSRVAPYDGYIVAADGLTLTLSQEVDFSGSGQHSIILKKRDGGVQSVPVVAGTTKRKVVMLAAPQEAVYTGNSALKTEFSFGSDSRHDAQMILVQTVTPNDDRTVKITGFNYHQDYYMQDGVTPFGRAFSNGFDTGFS

Physico‐chemical properties

protein length:	848 AA
molecular weight:	93018,22940 Da
isoelectric point:	5,50846
aromaticity:	0,10024
hydropathy:	-0,28278

Domain architecture

YP_008130361.1

1 848 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

NF040662
Unmapped

NF040662

YP_008130361.1

1848 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0118
STR

DC_0118 DC_0808

YP_008130361.1

1848 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
NF040662	Unmapped	-	352	827	NCBIfam	host specificity factor TipJ family phage tail protein	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_008130361.1

1 848 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	233	233	0,9878
Central domain	234	432	200	0,2203
C-terminal	433	848	415	0,0902

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Serratia phage Eta [NCBI] · taxon 1282995

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Serratia marcescens [NCBI] · taxon 615

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YP_008130361.1 [NCBI]

Genbank nucleotide accession

NC_021563 [NCBI]

CDS location

range 37989 -> 40535
strand +

CDS

TTGGCGCTAGTAATCCACTATACCCGCAATGAGAATGGCGGGTTTAATACCTCTCAGCACTACACAGAACCGATGTTATTCGTTACCGAGCGCATTCCAGACGGTGTGCCGTTCACTATTTACCGAGACTCGGTAGGCGAAGATAACAACGTGACAGAGAACTTCGACGCGCTGCGCGAGCCGGGAATATTCCACATTATAGAAGGTGCTGGCGGCGGGGTGGTAAGTGGCGCATTTAAATTGCTCGGCGCCGTGCTAAGCCCGATCATGAAGTTGCTTACGCCATCCACGGCAGCGGCGCAATCATTCTCGAACGTGCAAGGCGAAAGCCCAAACAACAGTCTGACCGATCGCAACAACAAGCCGCGCCCGTATGAACGTGTCTATGATATTTGCGGAACGGTTCAGAGTATTCCTAACAACCTCATGACTACCTATAGCGTATTTAACTCGTCTGGTAGAAAGGTTGAATACGGATATTATTGCGTTGGTCGTTCGTATCTTGATATTTCTGTATCCGGGGTCACTGACGGAGATACTCTGTTGCAGAACATCCCTGGCGCATCAGCATACATCTACGGTCCAAACACCTCGCCTAATAGCGGGTCTCCACAGTTAGCTATCGGTGACCCAATTGACCAGGGTTTGTATTCAACGGTATCTGCTAATGAGGTGGACGGCCAGACTCTTAAAGCTCCTAACGACCTGTCATCTCGCATGACAGATGGTGCTACTGCCGTTTATTCTGGCGGACTTGGCACAATAACAGATCCTTCAGGCGGCGCTGACTTTTCTGCTTATATCAAAGTTGGCTCTAACGTGGTTTTCAAAAATGTGTTTGTAGATGGAGTTGCTGATTTAAATGCGATCTATGTAGTAACAGACGTTAGCTCCGTGTCTATAACAGTAAACCCATCGCCAAAGCTTGACCAGTGGGTTAACGTTGGTGGCACGCCAAGGCCATTAAAGCTGTCGGATGATCCAATTGTGGAGCCTTATGACACTAAAGAGGCATCATTCACCCCTTGGGTGTCAATAACCAGGTTGCAGCCTGAGAGGCTACTTATCAATGTTAGCGCCCCGAATGGCATGTATCTGGATTGGGGTGCTGGCAAGCTACAGCTTGGCACGACATTTGAAGCTGAATACCAACTACTTGATGAACTAAACAATCCATACGGGCCAGTTTATGCGCAACAGGCTACAGTTACAGGTAAATCAAGCCAAGAGACAGGAGCGACCTTGTATGCTGTGCTGCCAGTTGCCAGTAAGGTACGTGTCCGTGTTCGCCGCGTAACTCCGTTCCAGTTTTGGTACAATGGCGTCGTGGTTGACGAGCTGAAATATAATGAGCTATTTGCCCAAGTGACTGACTATACACCTCATTACGGCAACATTACGACTGTGCATACGGCTAGGCTGCAAACCGTGAGAGCAACGGCAGTTAAACAACCACAGCTTAAAATACTGTGCACTGAGATGGTTCAGAAATACCTGGGAGCAGGCCAATTCGACGCCACATGGACACCAAACACCCAGGCTGTTCAGTCTATGATACGACTTTTGCGTGATCCTGTTGTTGGTGGCTTAGATTTGACCACAGCCAATATGGATGCATTGCTAGCTACTCAGACTGAGATTGAAACCTATTTCAATGACGTAAGAGCAGGTCAATTCTGCTATACGTTTGATACCTACACCACCACGGCACAGGACATTATCGAAGCGATCGCCGAGGCGGTTTTCTGCCGCGCTTACCGCGAAGGAAAGAGTATCTTGCTGGACTTTGACCGCCCGCGCGTCGGGCCGGAGATGGTATTCACTCATCGGAGCAAAATACCAGGGCAAGAGAAATGGACGCGATCTTTCGATGACCAAAGCAGTTATGACAGTCTTAAATTCAGCTATATAGACCCAAAAAAGAATACAAAGGAGACCATAACGATTCCGGCTGATGGTGGACGGAAGACATATACCTACGACTCCAAAGGTGTACGCAACTATCAACAAGCTTACTGGCTGGCGCATCGTCGCTACCAGATGATTAAATTGAAGCGGATTTCTGTTGATTTTTCAGCAACAGAAGAAGGTTCCTTAGTGCGTCCTGGTCGTGCAATAAGCGTAGTCAAAGGTTCTCGCGTAGCACCTTATGACGGATATATTGTCGCTGCTGATGGCTTAACATTGACACTTTCTCAGGAGGTTGATTTTAGCGGTTCAGGGCAGCATTCAATCATACTGAAAAAGCGCGATGGAGGCGTGCAAAGTGTTCCGGTAGTTGCCGGAACAACTAAACGAAAAGTGGTTATGTTGGCCGCCCCGCAGGAGGCCGTGTATACTGGAAACAGTGCGCTTAAAACGGAATTCTCATTTGGCAGCGATAGCCGCCATGACGCGCAGATGATTTTAGTACAGACCGTGACGCCAAATGACGACCGCACGGTTAAAATAACAGGATTTAACTACCACCAGGATTATTATATGCAGGACGGCGTAACGCCATTCGGTCGCGCGTTCAGCAATGGCTTTGATACCGGATTTTCTTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)