Phage RBP Database

Genbank accession

DBA08199.1 [GenBank]

Protein name

Phage tail fiber protein GpH

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,93

Protein sequence

MIDQNSQFFAILTNIGAAKQANADALGIPWKITQMGVGDAGGTDPIPSPTQTALVNERRRAPLNQLKVDPQNAAVIIAEQIIPENVGGWWIREIGLYDADNDLVAVANCAPSFKPLLNQGSGRTQVVRMNLIVSNSANVELKIDPAVVLATRAYVLDQLKSYAPLFSPAFSGAPTAPTPPLFAHDQKLATTEYVRMALGSAARAISYTGNTVLDEPVIGSILVAGSHDRDFTWTTPNLSVLPTGASFHIVNISGSTLTLVQRTAADHYISADDPSGVAISYTIPNNVTATISKYQPGLWLISHVSRPTAALKSLVDGLIDGTKPAGKAVQLANSRKLTLSGQASGSVQFDGSSDVTIDVRLADNLVLTGSPSAPTPAAFDRDSSIATTEYVRAALGSMAGAAVLTGDAILDAPLVGLTVVAGAHNREATWTTPQLSALPQGASLRLVNLSGFTVTLVQRSTTDRFISATDPSGTATTYIIPNGTSISLTKYQASMWLIEATPAFPALRSSPGYQKLPSGLILQFGSVSIPPGTGESTGWATLPIAFPNGPLTVVPSLQYGGTSSSWYGFSVWSGSITPTAIACSLNSGSTPREMAGVVNYVAIGY

Physico‐chemical properties

protein length:	605 AA
molecular weight:	63191,79060 Da
isoelectric point:	5,72752
aromaticity:	0,06942
hydropathy:	0,11901

Domain architecture

DBA08199.1

1 605 aa

ATT 6–152 · RBD 507–605

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR051934
Unmapped

IPR051934 G3DSA:2.60.40.3940

IPR022225
ATT

IPR022225 IPR054075

DBA08199.1

1605 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1371
STR

DC_1371

DBA08199.1

1605 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR051934	Unmapped	-	5	156	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
IPR022225	ATT	DC_0271	6	152	InterPro cluster	Phage tail fibre protein, N-terminal domain	Central	Medium	Text match	271 proteins / 271 hits
G3DSA:2.60.40.3940	RBD	G3DSA:2.60.40.3940	507	605	Merged direct domain	G3DSA:2.60.40.3940	C-terminal	Low	Positional only	77 proteins / 77 hits
IPR054075	RBD	DC_0717	515	605	InterPro cluster	Putative tail fiber protein gp53-like, C-terminal	C-terminal	Low	Positional only	174 proteins / 174 hits

Proteins with similar domain architecture

Phage

Pseudomonas phage vB_PaeM-D14A [NCBI] · taxon 2965058

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Pseudomonas aeruginosa strain 1-13 [NCBI] · taxon 1175452

Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus

Genbank protein accession

DBA08199.1 [NCBI]

Genbank nucleotide accession

BK061475.1 [NCBI]

CDS location

range 12731 -> 14548
strand +

CDS

ATGATCGATCAGAATTCACAGTTCTTCGCCATCCTGACCAACATCGGCGCGGCCAAGCAGGCCAACGCCGATGCGCTGGGCATCCCATGGAAGATTACCCAGATGGGCGTGGGTGACGCGGGCGGCACCGACCCGATTCCCTCCCCCACCCAGACCGCGCTGGTCAACGAGCGACGCCGGGCGCCGCTCAACCAGTTGAAGGTGGATCCGCAGAATGCGGCGGTGATCATCGCCGAACAGATCATCCCGGAGAACGTCGGCGGCTGGTGGATCCGTGAAATCGGGCTCTACGATGCCGACAACGACCTTGTCGCGGTCGCAAACTGCGCGCCCAGCTTCAAACCGTTGCTGAATCAGGGATCGGGACGTACGCAGGTTGTGCGCATGAACCTGATCGTCAGCAACTCCGCCAACGTCGAGTTGAAGATCGATCCTGCAGTGGTGCTTGCCACGCGCGCCTATGTACTCGACCAGTTGAAGAGCTACGCCCCGCTCTTCTCACCGGCATTCAGCGGAGCACCAACAGCCCCCACCCCACCATTGTTCGCACACGACCAGAAGCTTGCGACGACCGAGTACGTCAGAATGGCCCTGGGTAGCGCCGCGCGCGCAATCTCATACACCGGCAATACGGTGCTGGATGAACCGGTAATCGGTTCGATCCTCGTCGCGGGCTCGCATGACCGCGATTTCACATGGACCACGCCGAACCTATCTGTTCTTCCAACTGGCGCGTCGTTCCACATCGTCAACATCAGCGGTTCGACACTGACGCTGGTCCAGCGTACCGCTGCGGATCACTACATCAGCGCGGACGACCCGTCCGGCGTCGCAATCTCGTACACGATACCGAACAACGTCACCGCAACTATCTCGAAGTACCAGCCAGGCCTGTGGCTAATCAGCCATGTGTCACGCCCGACCGCTGCGCTGAAGAGCCTCGTGGATGGGCTGATCGACGGAACGAAGCCCGCAGGGAAAGCCGTGCAACTCGCGAACTCTCGCAAGCTCACGCTGAGTGGCCAAGCCAGCGGCAGTGTTCAGTTCGATGGCTCGAGCGACGTAACGATCGACGTCCGGCTCGCCGATAACCTCGTCCTGACGGGCTCCCCCAGCGCACCGACGCCGGCGGCGTTCGATAGGGATTCGTCGATCGCCACGACCGAATATGTGCGTGCCGCTCTCGGTAGCATGGCCGGCGCAGCGGTGCTGACGGGCGATGCTATCCTCGACGCCCCCCTCGTCGGCCTGACTGTGGTGGCCGGCGCACATAACCGAGAGGCGACGTGGACGACTCCGCAACTTTCGGCGCTCCCACAAGGCGCCTCGCTGCGCTTGGTCAACCTGAGCGGCTTCACCGTAACGCTGGTGCAACGCTCGACAACCGACCGCTTCATCAGCGCAACCGACCCCTCCGGGACTGCTACCACCTACATCATCCCCAACGGCACGTCGATTTCCCTCACGAAATACCAGGCGTCGATGTGGCTTATCGAAGCCACCCCGGCATTCCCCGCGCTGCGCTCGTCGCCGGGCTATCAGAAGCTGCCGAGCGGCCTGATTCTGCAGTTCGGCAGCGTCAGCATTCCGCCCGGCACCGGCGAAAGCACCGGATGGGCCACGCTACCCATCGCGTTCCCCAACGGTCCATTGACTGTCGTGCCGTCGCTGCAATACGGCGGGACCAGTTCGAGCTGGTACGGGTTCAGCGTCTGGTCAGGAAGCATTACGCCCACGGCGATCGCCTGCTCACTGAACAGCGGTTCGACGCCACGCGAGATGGCCGGCGTCGTGAACTACGTCGCAATCGGTTACTGA

Title	Authors	Date	PMID	Source
Prophage identification and molecular analysis in the genomes of 53 Pseudomonas aeruginosa strains isolated from critical care patients	Gonzalez de Aledo,M., Blasco,L., Lopez,M., Ortiz-Cartagena,C., Bleriot,I., Pacios,O., Hernandez-Garcia,M., Canton,R. and Tomas,M.	2023	—	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature