Protein

View in Explore
Genbank accession
DBA08199.1 [GenBank]
Protein name
Phage tail fiber protein GpH
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,94
TF
Evidence Phold
Probability 1,00
Protein sequence
MIDQNSQFFAILTNIGAAKQANADALGIPWKITQMGVGDAGGTDPIPSPTQTALVNERRRAPLNQLKVDPQNAAVIIAEQIIPENVGGWWIREIGLYDADNDLVAVANCAPSFKPLLNQGSGRTQVVRMNLIVSNSANVELKIDPAVVLATRAYVLDQLKSYAPLFSPAFSGAPTAPTPPLFAHDQKLATTEYVRMALGSAARAISYTGNTVLDEPVIGSILVAGSHDRDFTWTTPNLSVLPTGASFHIVNISGSTLTLVQRTAADHYISADDPSGVAISYTIPNNVTATISKYQPGLWLISHVSRPTAALKSLVDGLIDGTKPAGKAVQLANSRKLTLSGQASGSVQFDGSSDVTIDVRLADNLVLTGSPSAPTPAAFDRDSSIATTEYVRAALGSMAGAAVLTGDAILDAPLVGLTVVAGAHNREATWTTPQLSALPQGASLRLVNLSGFTVTLVQRSTTDRFISATDPSGTATTYIIPNGTSISLTKYQASMWLIEATPAFPALRSSPGYQKLPSGLILQFGSVSIPPGTGESTGWATLPIAFPNGPLTVVPSLQYGGTSSSWYGFSVWSGSITPTAIACSLNSGSTPREMAGVVNYVAIGY
Physico‐chemical
properties
protein length:605 AA
molecular weight: 63191,79060 Da
isoelectric point:5,72752
aromaticity:0,06942
hydropathy:0,11901

Domains

Domains [InterPro]
IPR051934
5–156
IPR051934 G3DSA:2.60.40.3940
IPR022225
6–152
IPR022225 IPR054075
DBA08199.1
1 605
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeM-D14A
[NCBI] 		2965058 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DBA08199.1 [NCBI]
Genbank nucleotide accession
BK061475.1 [NCBI]
CDS location
range 12731 -> 14548
strand +
CDS
ATGATCGATCAGAATTCACAGTTCTTCGCCATCCTGACCAACATCGGCGCGGCCAAGCAGGCCAACGCCGATGCGCTGGGCATCCCATGGAAGATTACCCAGATGGGCGTGGGTGACGCGGGCGGCACCGACCCGATTCCCTCCCCCACCCAGACCGCGCTGGTCAACGAGCGACGCCGGGCGCCGCTCAACCAGTTGAAGGTGGATCCGCAGAATGCGGCGGTGATCATCGCCGAACAGATCATCCCGGAGAACGTCGGCGGCTGGTGGATCCGTGAAATCGGGCTCTACGATGCCGACAACGACCTTGTCGCGGTCGCAAACTGCGCGCCCAGCTTCAAACCGTTGCTGAATCAGGGATCGGGACGTACGCAGGTTGTGCGCATGAACCTGATCGTCAGCAACTCCGCCAACGTCGAGTTGAAGATCGATCCTGCAGTGGTGCTTGCCACGCGCGCCTATGTACTCGACCAGTTGAAGAGCTACGCCCCGCTCTTCTCACCGGCATTCAGCGGAGCACCAACAGCCCCCACCCCACCATTGTTCGCACACGACCAGAAGCTTGCGACGACCGAGTACGTCAGAATGGCCCTGGGTAGCGCCGCGCGCGCAATCTCATACACCGGCAATACGGTGCTGGATGAACCGGTAATCGGTTCGATCCTCGTCGCGGGCTCGCATGACCGCGATTTCACATGGACCACGCCGAACCTATCTGTTCTTCCAACTGGCGCGTCGTTCCACATCGTCAACATCAGCGGTTCGACACTGACGCTGGTCCAGCGTACCGCTGCGGATCACTACATCAGCGCGGACGACCCGTCCGGCGTCGCAATCTCGTACACGATACCGAACAACGTCACCGCAACTATCTCGAAGTACCAGCCAGGCCTGTGGCTAATCAGCCATGTGTCACGCCCGACCGCTGCGCTGAAGAGCCTCGTGGATGGGCTGATCGACGGAACGAAGCCCGCAGGGAAAGCCGTGCAACTCGCGAACTCTCGCAAGCTCACGCTGAGTGGCCAAGCCAGCGGCAGTGTTCAGTTCGATGGCTCGAGCGACGTAACGATCGACGTCCGGCTCGCCGATAACCTCGTCCTGACGGGCTCCCCCAGCGCACCGACGCCGGCGGCGTTCGATAGGGATTCGTCGATCGCCACGACCGAATATGTGCGTGCCGCTCTCGGTAGCATGGCCGGCGCAGCGGTGCTGACGGGCGATGCTATCCTCGACGCCCCCCTCGTCGGCCTGACTGTGGTGGCCGGCGCACATAACCGAGAGGCGACGTGGACGACTCCGCAACTTTCGGCGCTCCCACAAGGCGCCTCGCTGCGCTTGGTCAACCTGAGCGGCTTCACCGTAACGCTGGTGCAACGCTCGACAACCGACCGCTTCATCAGCGCAACCGACCCCTCCGGGACTGCTACCACCTACATCATCCCCAACGGCACGTCGATTTCCCTCACGAAATACCAGGCGTCGATGTGGCTTATCGAAGCCACCCCGGCATTCCCCGCGCTGCGCTCGTCGCCGGGCTATCAGAAGCTGCCGAGCGGCCTGATTCTGCAGTTCGGCAGCGTCAGCATTCCGCCCGGCACCGGCGAAAGCACCGGATGGGCCACGCTACCCATCGCGTTCCCCAACGGTCCATTGACTGTCGTGCCGTCGCTGCAATACGGCGGGACCAGTTCGAGCTGGTACGGGTTCAGCGTCTGGTCAGGAAGCATTACGCCCACGGCGATCGCCTGCTCACTGAACAGCGGTTCGACGCCACGCGAGATGGCCGGCGTCGTGAACTACGTCGCAATCGGTTACTGA

Tertiary structure

PDB ID
d602c824bc8ffb0a7e22c418341006b0ab35ba29591a6c624fd0dde7fb1181da
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8422
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophage identification and molecular analysis in the genomes of 53 Pseudomonas aeruginosa strains isolated from critical care patients Gonzalez de Aledo,M., Blasco,L., Lopez,M., Ortiz-Cartagena,C., Bleriot,I., Pacios,O., Hernandez-Garcia,M., Canton,R. and Tomas,M. 2023 — GenBank