Phage RBP Database

Genbank accession

YP_009800744.1 [GenBank]

Protein name

tail protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect2

Probability 0,53

Protein sequence

MPKAAAQQVSFDAGELSPLLGARVDLAKYANGCLLLENFIATVQGPAVRRGGKRYVAAIKDSSKQAWLLPFIVSDGIAYMLEFGDHYIRFYVDRGQLVNSGAPVEIATPYALADLVTEDGTFAIRATQSADTMYLFHGAYPTQKLLRTSATTFELQPVTFVGGPFATVNIDNNVKVQASGQLGNITLTATAPVFRESDVGTLFYLEQEDNSYVTPWSVHDPMNVGFLRRVELRVYKCTKIGDAGDPRVTGTETPTHTIGRRWDGAGADDPNDQYGAVGVEWEYQHSGYGTVLITGFTDAQHVTGVVTTNEPTDPCMLPNTVVTAGTYKWARSLFNSTDGFPQMGTFWRNRLCLMRDRWLAMSVSADYENFQTKDADQQTDDSAIVQQLNARQLNKLAWMVESDSLLIGMTGDEWVIGPANASQPVSATNLTAARRTSYGSKRIQPVQVGGTIMFVQKAGRKLRDFKYDFSSDNYVSTDVTKIADHVTRGRSGTNSGIMSLCYQQEPHSIVWAARADGQLIGCTYDEEAGRSDVYGWHRHPDVNGFVECVASMPAPDGASDDLWMIVRRQINGQTVRYVEYLNPSLQDDEPQSSAFYVDSGITYNGAPTTTIAGLGHLEGVTVAVLTDGAVHPSRTVTNGSIALEWPASIVHIGVPTKCRIQTMQLNAGAANGTAQGKTKRVANVVTRLSRSLGGAVGPTFDADDLEPLNFRRPSNSMDRAVPLFDGDMESDWRSGYEGQSWVCYQNDQPLPVTLLGFFPILDTQDDR

Physico‐chemical properties

protein length:	767 AA
molecular weight:	83913,97080 Da
isoelectric point:	5,11269
aromaticity:	0,09257
hydropathy:	-0,27862

Domain architecture

YP_009800744.1

1 767 aa

TTP 345–486 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR058003
TTP

IPR058003

YP_009800744.1

1767 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0058
STR

DC_0058

YP_009800744.1

1767 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR058003	TTP	DC_0684	345	486	InterPro cluster	Tail tubular protein gp12	Central	High	Text match	1810 proteins / 1902 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009800744.1

1 767 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	184	184	0,9073
Central domain	185	383	200	0,0517
C-terminal	384	767	383	0,0930

Note: Constraints were applied during segmentation.
Fixed 17 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Burkholderia phage vB_BmuP_KL4 [NCBI] · taxon 2115967

Uroviricota Caudoviricetes Kelquatrovirus

Host No host information

Genbank protein accession

YP_009800744.1 [NCBI]

Genbank nucleotide accession

NC_047958 [NCBI]

CDS location

range 33755 -> 36058
strand -

CDS

ATGCCGAAGGCAGCAGCACAACAGGTATCGTTCGACGCCGGCGAGCTTTCGCCGCTGCTCGGTGCGCGCGTCGATCTCGCTAAGTACGCGAACGGATGCCTGCTGCTCGAGAACTTCATCGCGACGGTGCAGGGTCCGGCAGTGCGTCGCGGCGGCAAGCGCTACGTCGCCGCGATCAAGGATTCCAGCAAACAGGCGTGGTTGCTGCCGTTCATCGTGTCGGACGGCATCGCGTACATGCTGGAGTTCGGCGACCATTACATCCGGTTCTACGTCGACCGTGGCCAACTGGTCAACTCAGGCGCGCCGGTGGAAATTGCCACGCCGTACGCGCTCGCGGATCTCGTGACGGAGGATGGTACGTTCGCCATTCGCGCGACGCAGAGCGCGGACACCATGTATCTATTTCACGGCGCGTACCCAACGCAGAAGCTGTTGCGCACTTCGGCGACGACGTTCGAGCTGCAGCCCGTTACGTTCGTCGGCGGCCCCTTCGCGACGGTGAACATCGACAACAATGTGAAGGTGCAGGCGAGCGGCCAGCTCGGAAATATAACGCTCACGGCGACTGCACCGGTTTTCCGCGAGTCTGATGTCGGGACGCTGTTCTATCTCGAACAGGAGGACAACTCGTACGTAACGCCGTGGAGCGTTCACGATCCGATGAACGTCGGGTTTCTGCGTCGCGTCGAGTTGCGGGTCTACAAATGCACGAAGATCGGTGACGCCGGCGACCCACGCGTGACCGGCACGGAGACGCCGACGCACACTATCGGGCGTCGATGGGACGGTGCGGGCGCCGATGATCCGAACGACCAATACGGCGCCGTTGGCGTTGAGTGGGAATATCAGCATTCCGGTTATGGGACCGTGCTGATCACGGGATTCACGGACGCTCAGCACGTGACCGGCGTCGTGACGACGAACGAGCCGACCGACCCATGCATGTTGCCGAACACCGTCGTTACCGCGGGCACCTACAAATGGGCGCGGTCGCTGTTCAATTCGACGGACGGCTTTCCGCAGATGGGCACCTTCTGGCGTAACCGGTTGTGCCTGATGCGGGACCGCTGGCTCGCGATGTCGGTTTCGGCTGACTACGAGAATTTCCAAACGAAGGATGCCGATCAGCAGACAGACGATTCCGCGATCGTTCAGCAGCTCAACGCTCGACAGCTGAATAAGCTGGCATGGATGGTCGAGTCCGACAGCCTGCTGATCGGCATGACCGGTGACGAGTGGGTAATCGGGCCCGCGAACGCATCGCAGCCCGTGAGCGCAACGAACCTGACCGCCGCGCGACGCACGTCGTATGGATCGAAGCGAATCCAACCTGTGCAGGTCGGCGGCACGATCATGTTCGTGCAGAAGGCCGGCCGGAAATTGCGCGACTTCAAATACGACTTTTCGTCCGACAACTATGTGTCGACGGACGTCACGAAAATCGCTGACCACGTCACGCGCGGGCGTAGCGGCACGAACAGCGGGATCATGTCGCTCTGCTACCAGCAGGAGCCGCACTCTATCGTGTGGGCCGCCCGCGCCGACGGTCAGCTGATCGGCTGCACCTACGACGAAGAGGCCGGGCGCAGCGACGTCTACGGGTGGCACCGCCATCCCGATGTGAACGGCTTTGTCGAGTGCGTTGCATCGATGCCAGCGCCCGACGGCGCGTCCGATGACCTGTGGATGATCGTTCGTCGGCAAATCAACGGACAAACCGTGCGCTACGTCGAATATTTGAACCCGAGCCTGCAAGACGACGAGCCGCAGTCCTCTGCTTTCTACGTCGATTCCGGTATCACGTACAACGGCGCGCCGACGACAACCATCGCCGGCCTCGGGCATCTTGAAGGGGTGACGGTCGCGGTGCTGACGGACGGTGCCGTGCATCCGTCACGGACCGTGACTAACGGTTCGATTGCGCTCGAATGGCCGGCATCGATTGTGCACATCGGAGTTCCGACGAAATGCCGTATCCAGACCATGCAGCTGAACGCAGGCGCCGCAAACGGGACAGCGCAAGGAAAGACAAAGCGCGTGGCGAACGTCGTGACGCGCTTGTCGCGGAGCCTAGGCGGCGCCGTCGGCCCGACGTTCGACGCCGACGATCTCGAGCCATTGAATTTTCGTAGGCCGTCGAATTCGATGGACCGCGCGGTGCCGCTTTTCGATGGCGACATGGAGTCGGACTGGCGCAGTGGCTACGAGGGGCAGTCGTGGGTCTGCTATCAGAACGACCAGCCATTGCCCGTGACGCTGCTCGGCTTCTTCCCGATTCTGGATACGCAAGATGATCGCTGA

Title	Authors	Date	PMID	Source
Lysogenic conversion of Stenotrophomonas maltophilia by temperate phage DLP4	Dennis,J. and Stothard,P.	2019-04-16	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature