Phage RBP Database

Genbank accession

QVW27328.1 [GenBank]

Protein name

tail sheath protein

RBP type

TSP

Evidence DepoScope

Probability 0,98

Protein sequence

MALQSPGIETKETSVQSTVVRNSTGRAAIVGKFSWGPAYQIRQISNEVELVNYFGSPDNLTADYFMSAVNFLQYGNDLRVVRVVDKDAAKNASAIFNQIKTTIASQGSNYTVNDTIKVKYNSVVVEEKGKVSKVDSNGKILSVIIPSEKIVAHAKQIGTYPDISTGWTTEIVSQSSGVSALITIDGIESNSGITLLNLDIAKETIQGTAFQTLTQKYQLPSVVALYPGELGSTVQVEIISKAAYDSGAMISGYPSGVSVKNSGRSVMTYGPQTDNQYAFVVRRGGIVQESFIVSTEKTDKDIYGVNIFMDDFFANGGSQYVYGTSLNWPKGFSGILEFGGGLSSNDTVGADELMNGWDMFADREALHVPLLIAGACAGETVEIMSTVQKHVISIGDERQDCTVFVSPPRSLLVNIPLATAVDNMIEWRTGYKLSGGAAVDNNLNVSSSYGFLDGNYKYQYDKYNDVNRWVPLAGDIAGLCVYTDSVSQPWMSPAGYNRGQIRNCIKLAIEPRTAHRDAMYQVQINPVTGFAGGSGFVLFGDKTLTNVPSPFDRINVRRLFNMIKKDIGDNAKYKLFENNDDFTRSSFRMDTGQYMTNIRALGGCYDYRVICDTTNNTPDVIDRNEFVATIYVKPPRSINYITLNFVATSTGADFDELVGPQAV

Physico‐chemical properties

protein length:	663 AA
molecular weight:	72388,63020 Da
isoelectric point:	5,13850
aromaticity:	0,09804
hydropathy:	-0,15732

Domain architecture

QVW27328.1

1 663 aa

TAS 24–187 · TAS 215–342 · TAS 347–544 · TAS 548–648 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR054564
TAS

IPR054564 IPR054565 IPR035326 IPR035089 IPR020287

IPR054564
TAS

IPR054564 IPR054565 IPR052042

QVW27328.1

1663 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1554
STR

DC_1554

QVW27328.1

1663 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR054564	TAS	DC_0229	24	83	InterPro cluster	Tail sheath protein Gp18-like, domain III N-terminal region	N-terminal	High	Text match	16 proteins / 16 hits
IPR054564	TAS	DC_0229	24	85	InterPro cluster	Tail sheath protein Gp18-like, domain III N-terminal region	N-terminal	High	Text match	16 proteins / 16 hits
IPR054565	TAS	DC_0242	85	187	InterPro cluster	Tail sheath protein Gp18-like, domain I	N-terminal	High	Text match	12 proteins / 12 hits
IPR054565	TAS	DC_0242	98	187	InterPro cluster	Tail sheath protein Gp18-like, domain I	N-terminal	High	Text match	12 proteins / 12 hits
IPR035326	TAS	DC_0530	215	342	InterPro cluster	Phage tail sheath protein-like, beta-sandwich domain	Central	High	Text match	3 proteins / 3 hits
IPR035089	TAS	DC_0885	347	544	InterPro cluster	Tail sheath protein, subtilisin-like domain	Central	High	Text match	30 proteins / 30 hits
IPR052042	Unmapped	-	441	652	InterPro	Tail sheath structural protein	-	-	-	-
IPR020287	TAS	DC_0666	548	648	InterPro cluster	Tail sheath protein, C-terminal domain	C-terminal	High	Text match	43 proteins / 43 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QVW27328.1

1 663 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	96	96	0,9904
Central domain	97	295	200	0,4764
C-terminal	296	663	367	0,2649

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Cronobacter phage JC03 [NCBI] · taxon 2831170

Uroviricota Caudoviricetes Pantevenvirales Pseudotevenvirus Pseudotevenvirus gap161

Host

Cronobacter sakazakii [NCBI] · taxon 28141

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

QVW27328.1 [NCBI]

Genbank nucleotide accession

MW767161 [NCBI]

CDS location

range 73676 -> 75667
strand -

CDS

ATGGCTTTACAATCTCCAGGTATTGAAACCAAAGAAACATCGGTACAATCTACCGTTGTTCGAAATTCAACTGGTCGCGCTGCCATTGTCGGTAAATTTTCATGGGGGCCAGCTTATCAGATCCGTCAGATTTCTAACGAAGTCGAACTGGTAAACTATTTTGGTTCCCCAGACAACTTGACCGCTGACTATTTCATGAGTGCTGTTAACTTCTTGCAGTACGGTAATGATCTCCGTGTGGTTCGCGTTGTCGATAAAGATGCCGCTAAAAACGCAAGCGCAATTTTTAACCAGATCAAAACAACTATCGCATCACAGGGTTCTAACTACACTGTGAACGATACTATTAAAGTAAAATACAACAGCGTTGTTGTAGAAGAAAAAGGTAAAGTGTCCAAAGTTGACAGTAACGGCAAGATCCTCTCGGTAATCATTCCAAGCGAAAAAATCGTTGCCCATGCTAAACAGATTGGTACTTACCCAGATATTTCTACTGGCTGGACTACCGAAATTGTTTCTCAGTCTTCCGGTGTTTCTGCGTTGATTACGATTGACGGCATCGAAAGCAATTCTGGGATCACTCTGTTGAACCTGGATATTGCAAAAGAAACAATTCAGGGAACCGCTTTCCAGACTCTTACCCAGAAATATCAGTTGCCGTCTGTTGTGGCTCTGTATCCTGGTGAACTGGGTTCAACTGTTCAGGTGGAGATTATCTCCAAAGCTGCTTACGATTCTGGCGCTATGATTTCCGGCTACCCTTCTGGGGTTTCCGTTAAGAACAGCGGTCGTTCTGTAATGACCTACGGGCCACAGACCGATAACCAGTACGCTTTTGTTGTGCGTCGTGGTGGTATTGTACAGGAATCCTTCATCGTGTCAACCGAGAAGACCGATAAAGATATCTATGGTGTCAACATCTTCATGGATGACTTTTTCGCGAACGGTGGCTCTCAGTACGTTTACGGTACTTCCCTGAACTGGCCTAAAGGCTTCTCCGGTATCCTGGAGTTCGGCGGTGGTTTGTCCTCAAACGATACTGTAGGCGCTGATGAACTGATGAATGGTTGGGATATGTTCGCTGATCGCGAAGCTCTGCATGTGCCTCTGTTGATTGCTGGTGCGTGTGCTGGCGAAACCGTAGAGATTATGTCTACCGTTCAGAAACATGTTATTTCAATCGGTGATGAACGTCAGGATTGTACCGTGTTTGTGTCGCCTCCGCGCTCACTTCTGGTGAATATCCCGCTGGCAACTGCGGTTGATAACATGATTGAATGGCGTACTGGCTATAAACTCAGTGGTGGTGCTGCTGTTGATAACAATCTGAACGTAAGTTCAAGCTATGGCTTCCTGGATGGTAACTATAAATATCAGTATGATAAATACAATGACGTGAACCGTTGGGTTCCGCTGGCAGGTGATATCGCTGGCCTGTGTGTTTACACTGATAGCGTTTCTCAACCGTGGATGTCTCCAGCAGGTTACAACCGTGGTCAGATCCGCAACTGTATCAAACTGGCTATCGAACCGCGCACAGCACATCGTGACGCAATGTATCAGGTTCAGATTAACCCGGTAACTGGTTTCGCGGGTGGTTCCGGCTTCGTTCTGTTCGGTGATAAAACACTGACTAACGTACCGAGTCCATTTGACCGTATCAACGTTCGTCGCTTGTTCAACATGATCAAGAAAGACATCGGTGATAACGCGAAATACAAACTGTTTGAAAACAACGACGATTTCACCCGTTCTTCGTTCCGTATGGATACAGGTCAGTACATGACTAATATTCGTGCGCTGGGTGGTTGCTACGATTACCGTGTAATCTGTGACACCACGAACAACACGCCGGACGTAATCGACCGTAACGAGTTTGTAGCAACGATCTACGTGAAACCGCCTCGTTCTATCAACTACATCACTCTGAACTTCGTAGCAACGTCTACGGGCGCAGATTTCGATGAACTGGTAGGGCCGCAAGCCGTATAA

Title	Authors	Date	PMID	Source
Characterization and complete genome analysis of a novel phage JC03 infecting Cronobacter sakazakii	Jiang,J., Zhao,C., Li,Z. and Xu,C.	2024-11-20	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature