Phage RBP Database

Genbank accession

ADD21670.1 [GenBank]

Protein name

tail tubular protein B

RBP type

TSP

Evidence DepoScope

Probability 1,00

Protein sequence

MGKVSGSYGSVVRGVSEQVPQDRRPGQHFEQVNMISDPVRGLARRHGSLLQDEKQIRQFDQGIWDAMVADTARHKEFTFFVDGVEYALIHRTTASPTPEVTGLSFAWCFNKDARKFIPIVYASNDPVLEQLRSGGVSAAVNVGRYIYLAGNNIVPRWTPNSKFDNTTNKSKLAFWVRGGTYSTKFSATLARADGTKVTATYKTKPSSYPGLLDTSDLASSDPDYQKKVLDRTNAYNSAVTAWIGEAAEDSTPENIANKLAAQFTSQGVTGVSVINSTVIVDNAQFVEASGDDGGDGTLMRAVGNEVTALDLVSTVHWGGKVVKVRPKKNNGEDAFYLQAELKEGNGPWGEVSWKETAGYEMKPVEVFVQGTVVGGTLYLASTAAKLTEIAGGVHPDYKANVVGDDISCPLPYFFGKSIDYLGMFQDRLVIGSGATLFFSRPGDYFNWFRTSVLTVDDRDPIEMYALGSEDDTIKTSTTYDRNILLFGKRMQYTVNGRQPLTPKSASIVILSAHEDAIDADPQNSGNFVFYGKWRNGVSSLHQIQMGMLADSPESFNVSQQLDQYLQGKPVQIVALTSPNTVVLRTDASRNTLYTYTYLDTPAGSERLFDAWSKWTWDETLGVVTALARHDGDILSFTLRKGVDRTGANRIWIAADRFVLDTQISDLPYADSLRPATAALSPGPDAFINTASTQFDDVGVAVFNRSHQYGFLGSTFGKLDEFTEQYGMEALPSMTVGVMYPSCVTPTNPYVLDRNEKAIVNGRLTLGRIGVSVTDTGGMTCDVETANGTSRTLNFNGRLLGRISDQIGRQPIVTTSVNATIGKEVRECKYTLGAKTWLPLTITAIEWTGQFFNNARRV

Physico‐chemical properties

protein length:	857 AA
molecular weight:	93866,17790 Da
isoelectric point:	5,66875
aromaticity:	0,09918
hydropathy:	-0,27503

Domain architecture

ADD21670.1

1 857 aa

TTP 1–48 · TTP 160–856 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR058003
TTP

IPR058003 IPR058003

ADD21670.1

1857 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0058
STR

DC_0058

ADD21670.1

1857 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR058003	TTP	DC_0684	1	48	InterPro cluster	Tail tubular protein gp12	Central	High	Text match	1810 proteins / 1902 hits
IPR058003	TTP	DC_0684	160	856	InterPro cluster	Tail tubular protein gp12	Central	High	Text match	1810 proteins / 1902 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

ADD21670.1

1 857 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	161	161	0,9099
Central domain	162	360	200	0,3433
C-terminal	361	857	496	0,2770

Note: Constraints were applied during segmentation.
Fixed 5 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Caulobacter phage Cd1 [NCBI] · taxon 718008

Uroviricota Caudoviricetes Autographivirales Conareevirus Conareevirus Cd1

Host

Caulobacter crescentus [NCBI] · taxon 155892

cellular organisms Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales

Genbank protein accession

ADD21670.1 [NCBI]

Genbank nucleotide accession

GU393987 [NCBI]

CDS location

range 25353 -> 27926
strand +

CDS

ATGGGCAAAGTCTCTGGTTCCTACGGTAGCGTAGTCCGAGGGGTGTCGGAGCAGGTCCCACAGGACCGTCGCCCCGGCCAACACTTCGAGCAGGTCAATATGATCTCGGACCCCGTGCGCGGCCTAGCTCGCCGCCACGGGAGCCTCTTGCAGGACGAGAAGCAAATCCGACAGTTCGACCAAGGCATTTGGGATGCTATGGTCGCGGACACCGCTCGCCACAAGGAGTTCACGTTCTTCGTGGATGGCGTTGAATACGCCCTGATCCACCGCACCACCGCGTCCCCGACGCCCGAGGTCACTGGCCTCAGCTTCGCATGGTGCTTCAACAAAGACGCGCGCAAGTTTATCCCTATCGTTTACGCCAGCAACGATCCCGTCCTTGAGCAACTGCGCTCGGGCGGCGTGTCCGCTGCCGTCAACGTGGGGCGCTACATCTACCTCGCGGGTAACAACATCGTTCCCCGCTGGACGCCGAACAGCAAGTTCGACAACACGACCAACAAGAGCAAGCTGGCCTTTTGGGTCCGTGGCGGCACCTACTCCACCAAGTTTAGCGCAACGCTGGCTCGGGCGGATGGGACCAAAGTTACGGCCACCTATAAGACCAAGCCGTCTTCCTACCCCGGCCTGCTGGATACGTCGGACTTGGCCTCTTCGGACCCCGACTACCAGAAGAAAGTGCTGGACCGCACCAACGCCTACAACTCGGCGGTGACTGCGTGGATCGGCGAAGCAGCCGAGGATAGCACCCCGGAGAACATCGCTAACAAGCTGGCGGCCCAGTTCACCAGCCAAGGCGTTACCGGCGTGTCCGTGATTAACTCCACGGTGATCGTGGACAACGCCCAGTTCGTTGAAGCCTCTGGCGACGACGGCGGGGACGGCACCCTCATGCGGGCCGTTGGCAATGAAGTCACGGCTCTGGACCTTGTGTCCACCGTCCACTGGGGCGGCAAGGTCGTCAAGGTTCGACCCAAGAAGAACAACGGCGAGGACGCCTTCTACCTGCAAGCTGAACTCAAAGAGGGCAATGGCCCTTGGGGTGAGGTCAGTTGGAAGGAAACCGCAGGCTACGAGATGAAGCCCGTGGAAGTCTTCGTTCAGGGCACCGTTGTGGGCGGGACGCTTTACCTAGCATCTACGGCAGCTAAGCTGACCGAGATCGCTGGTGGGGTTCACCCCGACTACAAGGCCAACGTGGTGGGCGACGACATTAGCTGCCCGCTGCCCTATTTCTTCGGCAAGAGCATCGACTACCTTGGCATGTTCCAAGACCGTCTGGTGATCGGCTCCGGGGCTACCCTGTTCTTCTCTCGGCCCGGCGACTACTTCAACTGGTTCCGCACGTCCGTCCTCACTGTGGACGACAGGGACCCGATTGAGATGTATGCCCTCGGCTCCGAGGACGATACGATCAAGACCTCGACCACCTATGACCGGAACATTCTGCTGTTCGGGAAGCGTATGCAATACACCGTCAACGGGAGACAGCCGCTTACGCCCAAGAGCGCGAGCATCGTCATCCTGTCTGCACACGAAGACGCCATTGACGCGGACCCGCAGAACAGCGGGAACTTCGTGTTCTACGGCAAGTGGCGTAACGGGGTGTCCAGCCTCCATCAAATCCAGATGGGTATGCTGGCCGACAGCCCGGAAAGCTTCAACGTCTCGCAGCAACTGGACCAATACCTGCAAGGGAAGCCGGTTCAGATCGTGGCGCTGACCTCGCCTAACACGGTGGTCCTCCGCACGGACGCAAGCCGCAACACGCTCTACACCTACACCTACCTAGACACGCCTGCGGGCAGCGAGCGTCTGTTCGACGCTTGGTCTAAGTGGACGTGGGACGAGACGCTGGGCGTGGTCACGGCTCTGGCCCGGCACGACGGGGACATTCTGTCCTTCACACTCCGCAAGGGTGTGGACCGGACAGGGGCCAACCGCATCTGGATCGCGGCTGACCGCTTCGTGCTGGACACGCAGATTTCGGACCTGCCCTACGCGGACAGCTTGAGGCCCGCTACGGCGGCGCTGAGCCCCGGCCCGGACGCCTTCATCAACACGGCCTCGACGCAGTTCGATGACGTGGGCGTGGCGGTGTTCAACAGGAGCCACCAATACGGCTTCTTGGGCTCTACGTTCGGCAAGCTGGACGAGTTCACCGAGCAATACGGCATGGAGGCCCTTCCGTCTATGACGGTGGGTGTCATGTATCCTAGCTGTGTCACCCCGACGAACCCCTACGTTCTCGACAGGAACGAGAAGGCTATCGTCAACGGGCGGCTCACGCTGGGCCGCATCGGCGTCTCGGTAACGGACACGGGCGGAATGACCTGCGACGTAGAGACTGCGAACGGGACCTCCCGAACGCTGAACTTCAACGGCAGGCTGCTGGGCCGTATCTCTGACCAGATCGGGCGACAGCCCATCGTCACTACCTCCGTAAACGCCACTATCGGCAAGGAGGTCCGAGAGTGTAAATACACGCTCGGGGCTAAGACTTGGCTACCCCTGACCATTACCGCAATCGAATGGACTGGTCAATTTTTCAATAACGCACGGAGGGTCTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)