Phage RBP Database

Genbank accession

CAL4858329.1 [GenBank]

Protein name

baseplate wedge subunit

RBP type

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect2

Probability 0,59

Protein sequence

MKELVNIGQMVDDGTGDYLREGGIKINNNFTETYDELGDGKNLHPAGAWQTIEAHKLTNGTLNAVFGKSYAVDTGTSKATIKLPKGTPADYNKVIRIRDTFSTWQANAVTIEPASGDTLKGGGTRVFSTNLTDLELVYCRPNRWEYLPNKLLNKISNGDIATVMKKEYLCTEGQTDFLNIFDNNDYNLVNTHVYLRGNLLYYGKDFSDDSDYGSPGATAGALVPLDGKSIRLRTPAQKGDSLMVVTYLDGIAQFRSTYNRLDCTILDAKLTNEVTAPGARLVADLETLDSITVEQLGYVFNSNSGLINTNTLEVYVNGVILNMAGRAGLPMMYCEGADANNLTDCQLMGGNWVTSHNDYTITTNDNGAVTSIEFGRKFEHGDIVTIKWFNNDIGTTMEIDEITDVTDDMYIQRGPEYNISGAVRVTDYTNPVLPNVEPEAQKFVRVQVPGDMFDLLYPVGTIYENAINKSNPVTYMGFGVWTRWGEKRVLVGWTEDNQDTQFGLNNNDLDINGQPTHTAGGTGGNRTITITNDNMPSTVTDKEVLVADVDGPVVIGGCQFDPDDSGPAYYKYRQEKVTTNVTHIPPKPIETLDPYITVYRWMRIA

Physico‐chemical properties

protein length:	605 AA
molecular weight:	66820,88880 Da
isoelectric point:	4,63928
aromaticity:	0,09091
hydropathy:	-0,38777

Domain architecture

CAL4858329.1

1 605 aa

ATT 1–147 · STR 148–158 · ATT 159–261 · TAS 267–391 · ATT 452–604 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR036240
STR

IPR036240 IPR054430 IPR053827

IPR034695
Unmapped

IPR034695

IPR008987
ATT

IPR008987 IPR056391

G3DSA:1.20.5.960
Unmapped

G3DSA:1.20.5.960

CAL4858329.1

1605 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_2238
STR

DC_2238

CAL4858329.1

1605 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR036240	STR	IPR036240	1	233	Merged direct domain	Gp9-like superfamily	Central	Low	Positional only	146 proteins / 146 hits
IPR034695	Unmapped	-	1	605	InterPro	Baseplate wedge protein gp10	-	-	-	-
IPR008987	ATT	DC_0752	2	147	InterPro cluster	Baseplate structural protein Gp9/Gp10, N-terminal domain	Central	Medium	Text match	242 proteins / 243 hits
G3DSA:1.20.5.960	Unmapped	-	13	43	Gene3D	Bacteriophage t4 gene product 9 (gp9)	-	-	-	-
IPR056391	ATT	DC_0417	159	261	InterPro cluster	Baseplate protein gp9-like, C-terminal	C-terminal	Medium	Text match	98 proteins / 98 hits
IPR054430	TAS	DC_0704	267	391	InterPro cluster	Baseplate wedge protein gp10, domain 3	Central	High	Text match	67 proteins / 67 hits
IPR053827	ATT	DC_0313	452	604	InterPro cluster	Baseplate structural protein Gp10, C-terminal domain	C-terminal	Medium	Text match	489 proteins / 489 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

CAL4858329.1

1 605 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	316	316	0,9381
Central domain	317	515	200	0,3325
C-terminal	516	605	89	0,9020

Note: Constraints were applied during segmentation.
Fixed 7 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Acinetobacter phage vB_AbaM_AB-Navy-v2 [NCBI] · taxon 3154088

Viruses

Host No host information

Genbank protein accession

CAL4858329.1 [NCBI]

Genbank nucleotide accession

OZ075066 [NCBI]

CDS location

range 135520 -> 137337
strand -

CDS

ATGAAAGAATTAGTAAACATTGGACAAATGGTTGATGATGGCACAGGAGATTATCTTCGTGAAGGTGGCATCAAGATCAATAACAACTTTACCGAGACCTATGATGAATTAGGCGATGGAAAGAATTTGCATCCTGCTGGTGCTTGGCAGACTATTGAAGCACATAAACTCACAAATGGCACACTGAATGCTGTATTCGGGAAGTCATATGCAGTTGATACGGGAACATCTAAAGCAACAATAAAATTACCTAAAGGCACTCCGGCCGATTACAATAAAGTTATTAGAATTCGAGATACATTTTCTACCTGGCAGGCCAATGCAGTTACAATTGAGCCTGCTAGTGGAGACACATTAAAAGGTGGTGGAACACGTGTCTTTAGTACAAACCTTACTGACTTAGAATTAGTTTATTGTCGTCCTAATCGCTGGGAATATCTACCAAACAAATTACTTAATAAAATTTCAAATGGCGATATTGCTACAGTAATGAAAAAGGAATATTTGTGTACTGAAGGGCAAACAGATTTTCTTAATATTTTTGACAATAATGACTATAACTTAGTCAACACACATGTCTATTTACGTGGCAACTTGCTTTATTACGGCAAAGATTTTTCTGATGATTCCGATTATGGTAGCCCTGGAGCAACGGCTGGCGCACTAGTTCCATTAGATGGCAAAAGTATCAGATTACGTACACCTGCTCAAAAGGGCGATTCATTAATGGTAGTAACTTACCTAGATGGCATCGCACAATTCAGATCAACGTATAACCGTTTGGATTGTACTATTCTTGATGCTAAATTAACCAATGAAGTTACCGCACCAGGTGCACGTTTAGTTGCAGATCTTGAAACATTGGATTCAATAACTGTTGAACAGCTCGGATACGTCTTCAATAGCAATAGCGGTTTAATTAATACCAATACACTAGAAGTGTATGTCAATGGCGTTATTTTGAATATGGCAGGGCGTGCAGGCTTACCGATGATGTATTGTGAAGGCGCTGATGCCAATAATTTGACTGATTGTCAATTAATGGGAGGTAATTGGGTTACTTCACACAATGACTACACAATTACTACAAATGATAACGGAGCGGTAACAAGCATAGAATTTGGACGAAAATTTGAACATGGCGATATCGTAACTATTAAATGGTTCAACAATGACATTGGCACAACAATGGAAATTGATGAAATCACAGATGTAACAGATGACATGTATATCCAACGTGGTCCTGAATACAATATTTCAGGTGCAGTTCGTGTAACAGATTATACAAACCCAGTTTTACCGAATGTAGAACCAGAAGCTCAGAAATTTGTACGTGTACAAGTGCCGGGCGACATGTTTGATTTGCTATATCCTGTTGGCACCATCTATGAAAATGCTATCAATAAATCTAATCCTGTAACATATATGGGCTTTGGTGTTTGGACAAGATGGGGCGAAAAACGTGTACTTGTTGGCTGGACTGAAGACAACCAAGATACACAGTTTGGTTTAAATAATAATGACCTTGACATTAATGGGCAGCCAACACATACTGCAGGTGGTACAGGCGGAAATCGAACAATTACTATTACAAATGATAATATGCCATCAACAGTTACTGATAAAGAGGTTCTTGTTGCTGATGTAGATGGGCCTGTTGTAATTGGCGGATGTCAATTTGATCCTGATGATTCTGGGCCGGCATATTATAAATATCGCCAAGAAAAAGTTACAACTAATGTTACTCATATTCCACCTAAACCTATTGAAACACTAGATCCATACATCACAGTGTATCGTTGGATGAGGATTGCATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)