Protein

View in Explore
Genbank accession
AJD82793.1 [GenBank]
Protein name
tail component protein
RBP type
TSP
Evidence RBPdetect
Probability 0,72
TF
Evidence RBPdetect2
Probability 0,79
Protein sequence
MTTLLLHKDAFRPSASTEKKSLRAGVRISTLLRQEMYISGRGKSLTRRVPFVVVRNGQPVLQAQWSGRIKKGDNLSIVHLPKGGGGGSNPMQIVMTVAIAVAAAYTGGAVGAAYGVGWGAAASAAVMIGGTLLLNMFFPPETPSPMDMNREKASPTYSLTAQGNTARLLEAIPVLYGRFRTFPDLASSPYSETVGNEQYLYQLFCITQGSMEIEKLQVDKDDFATYGEIQYQVVNPGEKVTLFPDNVITSIAVSGQEMTAQQMFGPFAVSAPGVEVNHIAVDLSWPGGAYYMNDQGKFNSSTVQVQFEYQKIDDNGNALGQWEILVEKGYTFSTSTPQSVTEKVAVALGRYQVRGIRTTPANSDNKEQNKTTWTALRGYAQSHHDYGDVTLLAVIMKATNNLNQSTSRQINVIGTRKLPVWDPVNGWSLTPQPTKNPAWAAADILRNPTYGRRLPTSRINIQELYRLSQVYDSRGDEFNGVFDSTSQLWDALSKVLRVGRTVPVNYAGLVDFVRNEPKTVPTFIFQPQNMVENTFSTDYMFVDTNSTPNYVQIEYTDGNTWDVATVDCILPGTAPTVPSKVSMMGITNRAQAWREGMSMAASNRDQRRMISFTTGREGYLPRYGDLVQISHDVPQWGQSGEVLGFNPGPDDPEWGLHGELVSNEPFEFAEGSNHAIVFKKRDGSPHGPFTVVPHPDGDAKKVIVQGTSAALEEIYISDGFREELTQYQFGPTERRGIRAIALSSTPDSSGRVALTFTNYADSVHSAENGGVVPPPGPESGLPGMNPVPIVSSVTVELTPFAWQQNIVATPARGATSYEFEISQDGVSWSNLGIQSTSSMQVNLPGGVWFVRVRGIGVAIGPWASWTGMIEASALPVSQIDHVSITSQVFGINLEWAVREDDFLAESVEIYWGTTNILGNASKLIQLPLPANKFAVTDLGPGQKRYFWFRVIDEAGRVGPWYNAGVGLLGSSSDQADIIMEYLDGKITETQLAQALIAKIESGGGAAVEVEAIQNALAAMYTIKTQLTAGGRTALAGIGVGVENNEGVLESQVLVLADRFAVGRSDDETGTFKSMFIIDNGNVYMDTAFIKNGTITNLMIGDIIQSNDFVSGVSGWRLHKGAQGLEMNGTGNGYRVRLTNTGLYVWNTNTGVLCVEVGLLT
Physico‐chemical
properties
protein length:1160 AA
molecular weight: 126004,49230 Da
isoelectric point:5,25371
aromaticity:0,09052
hydropathy:-0,18302

Domains

Domains [InterPro]
NF040662
273–764
NF040662 IPR015406
IPR055385
274–379
IPR055385 IPR032876 IPR053171
AJD82793.1
1 1160
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Achromobacter phage JWX
[NCBI] 		1589746 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Achromobacter xylosoxidans
[NCBI] 		85698 Bacteria > Proteobacteria > Betaproteobacteria > Burkholderiales > Alcaligenaceae > Achromobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AJD82793.1 [NCBI]
Genbank nucleotide accession
KP202969 [NCBI]
CDS location
range 20228 -> 23710
strand +
CDS
ATGACGACGCTCCTGCTGCATAAGGACGCCTTCCGCCCCTCGGCAAGCACAGAAAAGAAGAGCTTGCGAGCTGGGGTGCGTATCAGCACCTTGCTCCGGCAAGAGATGTATATCTCTGGCCGAGGCAAGTCCCTCACCCGCCGAGTGCCGTTTGTCGTGGTTCGGAATGGTCAGCCTGTGCTTCAAGCTCAATGGTCGGGCCGAATCAAGAAGGGGGACAACCTGTCGATCGTGCACTTGCCTAAGGGCGGTGGCGGTGGCAGTAACCCCATGCAGATCGTCATGACCGTGGCCATCGCTGTCGCCGCCGCCTATACGGGTGGCGCTGTTGGTGCAGCATACGGGGTTGGCTGGGGCGCTGCGGCTTCCGCTGCCGTCATGATTGGTGGCACCCTGCTCTTGAACATGTTCTTCCCGCCGGAGACGCCGTCGCCGATGGATATGAACAGGGAAAAGGCAAGCCCCACCTATTCCTTGACAGCACAGGGCAATACCGCGCGGCTGCTCGAGGCCATACCAGTGTTGTATGGCCGCTTTCGCACGTTCCCAGACTTGGCATCGTCGCCGTACAGCGAGACTGTTGGCAATGAGCAGTACTTGTACCAGCTCTTCTGCATCACGCAGGGCAGCATGGAAATTGAGAAGCTCCAAGTCGATAAGGACGACTTCGCCACGTATGGTGAGATTCAGTACCAGGTTGTGAATCCTGGTGAGAAGGTCACTCTGTTCCCAGACAATGTTATCACCAGCATTGCAGTCAGTGGCCAAGAGATGACCGCCCAACAAATGTTTGGTCCTTTTGCGGTCAGTGCACCCGGCGTTGAAGTCAACCACATTGCTGTCGACTTGTCGTGGCCGGGTGGTGCCTATTACATGAATGACCAGGGCAAGTTCAACTCGTCCACGGTCCAAGTGCAGTTTGAGTACCAGAAGATCGACGATAACGGGAACGCTCTCGGCCAATGGGAAATCCTCGTTGAGAAGGGCTATACCTTCTCGACCAGCACGCCCCAAAGTGTCACGGAAAAAGTTGCCGTGGCTCTCGGTCGCTACCAGGTGCGAGGCATCCGTACTACGCCGGCAAACTCGGATAACAAGGAGCAGAACAAGACAACTTGGACTGCTCTGCGTGGCTATGCCCAGTCACATCATGACTATGGTGACGTCACTTTGCTCGCGGTCATTATGAAGGCCACTAACAACCTGAACCAATCGACGTCGCGCCAGATCAACGTCATAGGTACGCGCAAGCTGCCAGTTTGGGACCCAGTCAACGGCTGGTCGCTGACCCCTCAGCCTACCAAAAACCCTGCTTGGGCTGCCGCGGATATTCTGCGTAACCCAACGTACGGTCGTCGGCTGCCGACGTCGCGTATCAACATCCAAGAGCTGTACCGCCTGTCACAGGTGTACGATTCGCGCGGTGACGAGTTCAACGGGGTCTTTGACTCCACGAGCCAATTGTGGGATGCACTGTCGAAGGTGTTGCGCGTGGGTCGGACTGTACCAGTCAACTACGCGGGCCTTGTCGACTTCGTACGCAACGAGCCCAAGACAGTGCCTACGTTCATCTTCCAGCCGCAGAACATGGTGGAGAACACGTTCAGCACTGATTACATGTTCGTGGATACCAATTCGACGCCCAACTATGTGCAGATCGAGTACACCGATGGCAATACGTGGGACGTGGCCACTGTGGACTGCATCCTGCCTGGTACTGCCCCGACTGTGCCGTCCAAAGTATCCATGATGGGTATTACCAATCGCGCGCAGGCTTGGCGCGAAGGCATGTCCATGGCCGCTTCCAACCGCGATCAGCGCCGGATGATTTCCTTCACGACTGGTCGCGAAGGGTATCTGCCACGCTATGGCGACCTGGTACAAATCTCACACGATGTTCCACAATGGGGCCAGTCAGGTGAAGTGCTGGGCTTTAACCCTGGTCCTGACGATCCTGAATGGGGTCTGCATGGCGAGCTGGTGTCCAATGAGCCCTTTGAGTTTGCAGAAGGGTCGAACCACGCCATAGTCTTCAAGAAGCGGGACGGATCGCCTCATGGGCCCTTTACGGTTGTGCCACATCCAGATGGCGATGCCAAGAAGGTTATCGTGCAGGGCACGTCTGCTGCTCTTGAGGAGATATACATTTCGGACGGTTTTCGTGAAGAGCTGACGCAGTATCAGTTCGGTCCTACCGAACGTCGTGGCATACGCGCAATCGCGTTGTCGTCTACTCCGGATTCGTCCGGTCGCGTCGCACTCACCTTCACGAACTACGCGGACAGTGTGCACTCCGCAGAAAACGGGGGCGTGGTGCCACCACCAGGGCCAGAATCTGGTTTGCCAGGCATGAACCCAGTGCCAATTGTCAGCTCCGTCACGGTTGAGCTGACGCCCTTTGCATGGCAGCAGAACATTGTGGCAACGCCAGCTCGTGGGGCTACGTCCTATGAGTTTGAGATCAGCCAGGACGGTGTCAGCTGGTCCAATTTGGGCATTCAATCGACCAGCTCTATGCAGGTTAACCTGCCTGGTGGTGTTTGGTTTGTCCGAGTGCGTGGTATCGGCGTAGCGATCGGTCCTTGGGCTTCTTGGACGGGCATGATCGAGGCATCGGCGCTGCCAGTGTCCCAGATCGACCACGTTAGCATCACTTCGCAGGTTTTTGGTATCAACCTCGAGTGGGCTGTGCGTGAAGACGACTTCCTGGCCGAGTCCGTGGAAATTTACTGGGGCACAACGAACATTCTGGGCAATGCTTCTAAGCTAATCCAGTTGCCGTTGCCAGCCAATAAGTTCGCTGTAACAGACCTCGGGCCGGGCCAGAAGCGGTATTTCTGGTTCCGGGTTATCGACGAAGCCGGCCGTGTTGGTCCTTGGTATAACGCCGGTGTCGGTTTGCTGGGCTCTTCGAGCGATCAGGCCGATATCATCATGGAGTACCTTGATGGTAAAATAACGGAAACGCAGCTCGCGCAAGCCCTCATTGCCAAGATCGAATCTGGGGGCGGTGCCGCCGTCGAGGTTGAGGCAATTCAGAACGCCTTGGCTGCAATGTATACCATCAAGACCCAGCTCACCGCAGGTGGCCGCACGGCTCTCGCCGGTATTGGTGTCGGGGTGGAAAACAACGAAGGCGTGCTCGAGTCCCAAGTCCTCGTTTTGGCAGACCGTTTTGCGGTGGGTCGTTCTGACGATGAGACTGGCACCTTCAAATCTATGTTCATCATTGACAATGGCAATGTGTACATGGATACGGCCTTCATCAAGAATGGCACTATTACCAACTTGATGATTGGCGATATCATCCAGTCCAATGACTTCGTGTCGGGTGTGTCTGGCTGGCGTCTCCACAAGGGCGCTCAAGGGCTCGAGATGAACGGCACCGGCAACGGGTACCGCGTCCGACTAACCAACACCGGCTTGTATGTGTGGAACACCAACACCGGTGTACTTTGCGTAGAAGTGGGGCTTTTGACTTAA

Tertiary structure

PDB ID
f8a18a26169668b60969539b1b55e479a571199981f5e81d1b0531378cfe2e0e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2270
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and genome comparisons of three Achromobacter phages of the Siphoviridae family Dreiseikelmann,B., Bunk,B., Rohde,M. and Wittmann,J. 2017-03-29 — GenBank