Phage RBP Database

Genbank accession

XQU42679.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,98

Protein sequence

MADYKLSELNSIDTIRSDDLLHVRVKKRPEMLGDEDRRMTYQDFLASFKLERFVQIAGSTMTGDLGIVKLLYGGKVVFNPTGSSEVTIGDVLKTFKINANGLKLTIADASRSATVYHTLNKPSPNELGMRTNEENDARYARLAVTNNFNIRQAIVTDGEQLTLKKATNAGASYIQGRDANNQQTWYVGQGNANNTNVYLYNHATGSMLTLDATASFNKTLRVMGQVQPSDFSNLDARYFTQTVANQRFAQLAGDNTFSGINNFVGEFKITRNNAALVIKNASNATGLYLLGVKADGTSKFYLGTDTSDSVVNLHNYSTSTTISLSDVISATKTVRITGQVQPSDWTNIDSRYIPAATLSNLAKLSDMNIFRSTQVILQDDLSLQLRNTVQDNALYFAGYNADNVRRWYIGNGEVENPSKLIIHNDKAGTTIFMQDDFFLNKTVKINGQVQPSDWANIDARYYGKSETDSKYFWSASRGLVKETEGGVAWNQPSGIYTESTSDGGAELLVLNLFCNTKASTPSAQLKFRYKNGGMWYRTARDALGFEDVWSKVYTEAQRPTPSEIGAYTKAETDQKIATAISDSTDLNKIYPVGIVTWFNSNVDPNTALPGLTWTYLNNGVGRTIRIAAANGSDVATTGGSDSVTLAVGNLPSHTHSFSATTSSFDYGTKGTNSTGGHTHSVSGTTSAAGNHAHHLGLLLVNGGDALYGYTTVGNSLPRTLDWLDRRDNKFPNTNTTGNHTHTWSGTTSGAGDHSHSVGIGAHSHTVSGNTGSTGSGSAFSVTNQFYKLMAWVRTA

Physico‐chemical properties

protein length:	795 AA
molecular weight:	86413,64820 Da
isoelectric point:	7,32162
aromaticity:	0,09182
hydropathy:	-0,40591

Domain architecture

XQU42679.1

1 795 aa

ATT 158–247 · ATT 273–361 · ATT 381–465 · RBD 484–584 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:6.20.80.10
STR

G3DSA:6.20.80.10 G3DSA:6.20.80.10 G3DSA:6.20.80.10 IPR022246

IPR048388
ATT

IPR048388 IPR048388 IPR048388

XQU42679.1

1795 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1566
STR

DC_1566

XQU42679.1

1795 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:6.20.80.10	STR	G3DSA:6.20.80.10	157	218	Merged direct domain	G3DSA:6.20.80.10	Central	Low	Positional only	37 proteins / 37 hits
IPR048388	ATT	DC_0224	158	247	InterPro cluster	Tail fibre protein gp37, trimerization region	Central	Medium	Text match	404 proteins / 802 hits
G3DSA:6.20.80.10	STR	G3DSA:6.20.80.10	273	332	Merged direct domain	G3DSA:6.20.80.10	Central	Low	Positional only	37 proteins / 37 hits
IPR048388	ATT	DC_0224	275	361	InterPro cluster	Tail fibre protein gp37, trimerization region	Central	Medium	Text match	404 proteins / 802 hits
G3DSA:6.20.80.10	STR	G3DSA:6.20.80.10	381	441	Merged direct domain	G3DSA:6.20.80.10	Central	Low	Positional only	37 proteins / 37 hits
IPR048388	ATT	DC_0224	383	465	InterPro cluster	Tail fibre protein gp37, trimerization region	Central	Medium	Text match	404 proteins / 802 hits
IPR022246	RBD	DC_0194	484	584	InterPro cluster	Bacteriophage T7, Gp17, C-terminal	C-terminal	Low	Positional only	166 proteins / 166 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XQU42679.1

1 795 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	385	385	0,5164
Central domain	386	584	200	0,1636
C-terminal	585	795	210	0,9900

Note: Constraints were applied during segmentation.
Fixed 11 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Escherichia phage vB_EcoM_P54 [NCBI] · taxon 3412730

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Escherichia coli [NCBI] · taxon 562

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

XQU42679.1 [NCBI]

Genbank nucleotide accession

PV390658.1 [NCBI]

CDS location

range 50744 -> 53131
strand -

CDS

ATGGCAGATTACAAGTTGAGTGAATTAAACTCAATCGACACAATCCGTTCAGATGACCTTCTTCATGTCAGAGTTAAAAAGAGACCTGAAATGCTGGGTGATGAAGACCGTCGAATGACCTATCAAGACTTCTTAGCATCTTTTAAACTTGAAAGGTTTGTTCAGATTGCTGGTAGTACCATGACGGGTGATTTAGGGATTGTTAAGTTACTTTATGGTGGTAAGGTAGTCTTTAACCCAACAGGCTCTTCTGAGGTTACTATTGGGGATGTTTTAAAGACTTTTAAAATCAACGCAAATGGCCTTAAACTGACTATTGCAGATGCTTCAAGGTCGGCAACTGTTTATCATACTCTGAATAAACCAAGCCCTAATGAACTTGGGATGAGAACTAATGAAGAGAATGATGCAAGATATGCAAGGCTGGCTGTAACAAATAACTTCAACATTAGGCAAGCAATTGTAACTGATGGTGAGCAGTTAACCCTTAAGAAAGCAACGAATGCAGGAGCTTCATATATTCAGGGTAGAGATGCTAATAACCAGCAAACGTGGTATGTTGGACAGGGAAATGCAAACAACACTAATGTTTATCTGTACAATCATGCCACTGGCTCAATGTTAACCCTTGACGCAACAGCGTCATTTAACAAGACACTAAGAGTCATGGGTCAAGTTCAACCTTCTGACTTCTCTAACTTAGATGCTAGATACTTTACTCAGACAGTAGCTAATCAGAGATTTGCACAGCTAGCTGGTGATAACACCTTTAGTGGTATTAATAATTTTGTAGGTGAGTTCAAAATTACCAGAAATAATGCTGCGTTAGTTATTAAGAATGCCTCTAATGCAACCGGACTATACCTACTTGGAGTGAAGGCTGATGGTACAAGCAAATTCTACTTAGGGACTGATACTTCTGACTCTGTAGTTAATCTGCACAACTACAGCACAAGCACAACCATCTCTTTGTCAGATGTGATTAGTGCTACTAAGACTGTGAGAATCACTGGTCAAGTTCAACCTTCTGATTGGACTAACATTGACTCTAGATACATTCCAGCAGCTACTTTGAGTAATCTTGCTAAACTCAGTGACATGAACATTTTCAGGTCTACACAAGTTATTCTCCAAGATGACCTATCGTTACAGCTAAGAAACACTGTTCAGGATAATGCACTATACTTTGCTGGTTATAACGCTGATAATGTGAGAAGATGGTACATCGGGAATGGCGAGGTAGAAAACCCATCTAAACTCATTATCCACAATGATAAAGCTGGGACCACTATTTTTATGCAAGATGACTTTTTTCTAAATAAAACAGTGAAAATCAATGGTCAAGTTCAACCCTCTGATTGGGCTAACATTGATGCAAGATACTACGGTAAATCAGAAACTGATTCGAAGTATTTCTGGTCAGCATCCAGAGGTCTGGTAAAAGAGACTGAAGGTGGTGTAGCTTGGAACCAACCTTCAGGAATCTACACTGAATCAACAAGTGATGGTGGGGCAGAACTCTTAGTCTTAAACCTGTTTTGTAATACGAAAGCCTCTACACCATCTGCACAATTAAAGTTTAGGTACAAAAATGGTGGGATGTGGTACAGAACAGCCAGAGATGCACTTGGTTTTGAGGATGTATGGTCTAAGGTTTACACCGAAGCTCAGAGACCAACCCCTTCAGAGATTGGTGCATACACTAAAGCAGAAACTGACCAGAAAATTGCAACAGCAATTAGTGACTCTACAGACCTTAATAAAATCTATCCAGTAGGTATTGTAACGTGGTTTAACAGTAATGTTGACCCTAATACAGCACTTCCTGGTCTAACTTGGACGTACCTGAACAATGGTGTTGGTAGAACTATCAGAATCGCAGCAGCAAACGGTTCAGATGTTGCTACAACAGGTGGTTCAGATTCTGTGACGTTAGCTGTTGGTAACTTACCATCACACACTCACAGTTTCTCTGCTACCACTTCATCTTTTGATTATGGTACGAAGGGCACTAATAGTACTGGTGGTCATACTCACTCTGTAAGTGGTACAACAAGTGCTGCTGGTAACCACGCTCACCACTTAGGTCTGCTATTGGTTAATGGTGGTGATGCTTTGTACGGATATACAACAGTTGGTAACAGCCTCCCTAGAACGCTTGACTGGCTTGATAGAAGAGATAACAAGTTCCCTAACACTAACACAACTGGTAACCATACACACACATGGTCTGGTACTACAAGCGGTGCTGGTGACCATTCCCACTCTGTAGGTATTGGTGCTCACAGCCACACAGTTAGTGGTAACACTGGTAGTACAGGTTCTGGTTCAGCATTTAGTGTTACTAACCAGTTCTATAAGTTAATGGCTTGGGTAAGAACTGCTTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)