Phage RBP Database

Genbank accession

XEO41410.1 [GenBank]

Protein name

long tail fiber proximal subunit protein

RBP type

TSP

Evidence RBPdetect

Probability 0,58

TF

Evidence RBPdetect2

Probability 0,59

Protein sequence

MSEVKTSFRASYGLDAAGEKVINVAKADKTVMTDGVNVEYLIQENTTQQYDPSRAYEKGFIVEFNGRLWMAEQNIAKPAGTFFEGYWKPLRTDPKWYPFDSGKYQLKVGDYISVDTRAGLDVELTLPTSPAPQEGDTISIKDIGGLTGYTSVIVIAPVESIIDKGASIPQKRMTIPFSEWTFVYTKKQWSLFDGDEAPVARTVVPGGPIRVQSGETIIRNYDRFAPIVLTFPKFANNGDIIHFVGMNQNSVPYYHLELNTFDSNTSIMSPGIHKEIFYRSLSGYFIYNSSSSTWVLFDTDTVDRLRTVSTDTDLFPNETVTVVGKDNVTAQTIKLTLPDNVQPGDQITIALNYMRKAQTINIVPKGSDMILTNKNLTQFPKRSSYPPDGNWVNTNILSYNGNSDYPPVIKFAYIDMGPIKQWLMVDCIPALERVDPSSDATRGRLGVIALATQAQANLDKSAITAEAKEVAITPETLSNRTATEARQGIAKISTRAQNQLNTDDANYNDFDIVTPLKLNQKQATETMRGLAEIATQAETNSNTDDTRIITSKKLDGRRARTDLAGVAKLVAAGGVAPVKNGTNTRDTAGTGIYDHSDYVNIVTPKTLREFYSTEMALGTVYLANSAEVISGAASVAKYPLAVTPETLHTKTATDGRIGFTQVANQTEVNAGTDYFKYVTPKTLNDRKATEALTGIAKLATQAEFNAGTAGLISGPDKIKAYLSTPSRTAVVAASGLTQAGNLWTTTTFDIVAPTETQRGTTRLATQTEVNAGTDDITVVTPKKLHAKKATTAAEGIIRIANTAETIAGTSGTTAVCPVNLKQVIQVETSWEASASLRGPVKISSGSITFVGNDTVGSTADIETYAKSGYAISPYELNKTLVNYMPLKAKAIDSDKLDGIDSTQFIRRDINQTVEGSLTFTSPTLFNDRVDVREMLEVGKTSGESLNTDNGKLRMVSGAVAPRAWAFAIHDGNVNGVGSSTLKFGYKYLSAQPGPIDIVAYEIHHSGAIKFNNTLNVVGATTINNTLNVSGIVSTDSVGFRIAGFDALTAVSGQTKVGTTTRGLDLIATDAAFIRALDSGTVYTVMTTKNRAAILDPLYVKKSGDTMTGRLNVSQPITATIPQSLATPNAVPNSNNFGTWTIDITDPAIYNTMRPYLVGVYAKNEETGATLPWYDKYDEFNGPGTLSQFGSSASNGSGTYQIWAPRPPADKANLPGHIAGTMWSRQWNPATNRWDGWGRMFTNNHPPLPQDIGAMSNNGSVFDSMRIRDWIQIGNLRIYANPETKTVRFDWIE

Physico‐chemical properties

protein length:	1292 AA
molecular weight:	140274,97650 Da
isoelectric point:	5,96493
aromaticity:	0,08359
hydropathy:	-0,28406

Domain architecture

XEO41410.1

1 1292 aa

STR 83–204 · ATT 1131–1240 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR036240
STR

IPR036240 IPR048391

XEO41410.1

11292 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1986
ATT

DC_1986 DC_1209

XEO41410.1

11292 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR036240	STR	IPR036240	83	204	Merged direct domain	Gp9-like superfamily	Central	Low	Positional only	146 proteins / 146 hits
IPR048391	ATT	DC_0875	1131	1240	InterPro cluster	Long-tail fiber proximal subunit domain	C-terminal	Medium	Text match	795 proteins / 796 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XEO41410.1

1 1292 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	985	985	0,7196
Central domain	986	1184	200	0,2217
C-terminal	1185	1292	107	0,6866

Note: Constraints were applied during segmentation.
Fixed 247 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Acinetobacter phage vB_AbaM_DLP3 [NCBI] · taxon 3243735

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Acinetobacter baumannii AB5075 [NCBI] · taxon 1116234

Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii

Genbank protein accession

XEO41410.1 [NCBI]

Genbank nucleotide accession

PQ034586 [NCBI]

CDS location

range 149465 -> 153343
strand +

CDS

ATGTCTGAAGTAAAAACAAGTTTCCGTGCGTCATACGGGTTGGACGCAGCCGGTGAAAAAGTAATCAATGTAGCAAAAGCTGACAAAACTGTCATGACTGATGGTGTAAACGTTGAATACCTCATCCAAGAAAACACAACCCAACAATATGATCCTTCTCGTGCATATGAGAAAGGATTTATTGTAGAATTTAATGGCCGACTTTGGATGGCCGAACAGAATATTGCTAAACCTGCAGGAACATTCTTTGAAGGTTACTGGAAGCCATTGCGTACCGACCCTAAATGGTACCCATTTGATTCTGGCAAGTATCAATTAAAAGTTGGTGATTATATTTCTGTTGATACACGTGCAGGTTTAGACGTAGAATTAACTTTACCAACATCCCCAGCACCACAAGAAGGCGACACTATTTCCATTAAAGATATTGGCGGCTTGACTGGGTATACTTCTGTTATTGTTATTGCCCCTGTTGAATCTATTATTGATAAAGGCGCAAGCATCCCACAAAAACGTATGACTATTCCATTTTCTGAGTGGACATTTGTTTATACGAAGAAGCAATGGTCATTATTCGACGGTGACGAGGCACCTGTGGCTCGCACAGTTGTACCAGGGGGACCAATTCGTGTTCAATCAGGTGAAACAATTATTCGTAATTATGATCGCTTTGCGCCTATTGTGTTGACATTCCCAAAATTCGCTAATAATGGCGATATTATCCACTTTGTAGGCATGAATCAAAATTCGGTACCATATTACCACCTAGAATTGAACACATTTGATTCTAATACAAGTATAATGTCTCCTGGCATACACAAAGAGATATTCTATCGTTCACTAAGTGGCTATTTTATTTACAATAGCTCATCGTCTACTTGGGTACTTTTTGACACAGATACAGTAGATCGACTACGAACTGTTAGTACTGATACTGATTTGTTCCCTAATGAAACTGTCACAGTAGTCGGCAAAGATAACGTAACCGCGCAAACAATTAAATTGACTCTGCCTGATAATGTGCAACCTGGTGACCAAATCACTATTGCATTGAATTATATGCGAAAGGCTCAAACAATTAATATCGTCCCTAAAGGGTCTGATATGATTTTGACTAATAAAAATCTTACACAGTTCCCTAAGCGTTCGAGTTATCCACCTGATGGCAATTGGGTCAATACCAACATTTTGTCATATAATGGAAACAGCGATTATCCGCCTGTGATTAAGTTTGCATACATTGATATGGGGCCTATTAAACAGTGGTTAATGGTCGACTGTATTCCTGCATTAGAACGCGTAGACCCTTCATCAGATGCAACACGTGGAAGATTAGGTGTTATTGCATTAGCTACCCAAGCTCAAGCGAATTTAGATAAATCTGCCATAACCGCCGAAGCGAAAGAAGTAGCGATTACACCTGAAACTTTATCAAATAGAACCGCTACCGAGGCTCGCCAAGGTATAGCTAAAATTTCAACTAGGGCACAGAACCAACTTAATACTGATGACGCTAATTATAACGATTTTGACATAGTTACTCCTCTCAAGTTGAATCAAAAACAAGCCACTGAAACTATGCGTGGTCTTGCTGAAATTGCCACTCAAGCTGAAACGAATAGCAACACCGACGACACACGAATTATTACATCTAAGAAATTGGATGGACGTAGAGCAAGAACAGATCTTGCAGGCGTAGCAAAACTCGTTGCTGCTGGCGGTGTAGCACCAGTTAAAAATGGCACAAATACACGAGATACTGCTGGTACTGGCATCTATGACCATTCAGATTATGTGAACATTGTAACTCCAAAAACATTAAGAGAATTTTATTCTACAGAAATGGCTTTAGGTACAGTGTACTTAGCAAATTCTGCTGAAGTTATTTCTGGTGCTGCATCAGTAGCGAAGTACCCATTAGCTGTTACTCCAGAAACATTGCACACAAAAACTGCTACAGATGGTAGAATCGGTTTTACCCAGGTTGCGAATCAAACCGAAGTTAATGCCGGCACCGATTATTTTAAATATGTTACGCCAAAAACATTAAATGATCGTAAAGCTACAGAAGCTTTGACTGGTATTGCTAAACTCGCAACTCAAGCTGAGTTTAATGCTGGTACTGCAGGGCTAATCTCTGGTCCAGATAAAATTAAAGCATATTTGTCTACACCTTCACGCACTGCAGTAGTTGCAGCATCCGGTTTGACTCAAGCTGGCAACCTTTGGACTACAACAACATTTGACATTGTTGCACCTACTGAAACACAACGTGGTACAACACGATTAGCTACTCAAACTGAAGTTAATGCCGGCACCGATGACATCACTGTTGTTACTCCTAAAAAGTTACATGCTAAAAAGGCTACAACTGCTGCAGAAGGTATTATTAGAATTGCTAATACTGCAGAGACTATAGCTGGAACTTCTGGCACTACCGCTGTATGTCCAGTAAACTTAAAGCAAGTAATACAAGTCGAGACGTCTTGGGAGGCTTCAGCTTCTTTGCGTGGTCCGGTAAAAATCTCTAGCGGTTCGATTACATTTGTAGGAAATGATACTGTTGGATCAACAGCAGATATTGAAACTTATGCTAAGTCCGGATATGCGATTTCACCATATGAGTTGAATAAAACTCTTGTGAATTACATGCCATTGAAAGCTAAGGCTATAGATTCCGATAAATTAGATGGAATTGACTCTACTCAGTTCATCCGTAGAGATATTAATCAGACTGTTGAAGGAAGTTTAACATTCACTAGTCCTACATTGTTTAATGATCGTGTTGACGTACGTGAAATGTTAGAAGTGGGCAAAACTTCAGGTGAATCACTTAACACAGACAATGGCAAGCTACGTATGGTTTCTGGTGCTGTAGCTCCTCGAGCTTGGGCATTTGCGATACATGACGGTAATGTTAATGGTGTTGGCTCATCTACACTTAAATTTGGCTATAAGTATCTTAGCGCTCAACCAGGTCCTATTGACATTGTTGCATATGAAATTCATCATTCCGGTGCAATTAAATTCAACAATACTTTAAATGTAGTTGGTGCGACGACAATAAACAACACACTAAATGTTTCAGGTATCGTAAGTACAGACTCTGTCGGATTCCGAATTGCTGGATTTGATGCGTTGACGGCAGTCTCAGGACAAACTAAAGTAGGTACTACTACACGTGGTTTAGACTTGATTGCAACTGATGCTGCATTTATTCGAGCTTTGGATTCAGGCACAGTATATACTGTAATGACAACAAAAAATCGTGCAGCGATTTTAGATCCATTGTATGTCAAAAAGTCTGGTGACACTATGACTGGTAGATTAAACGTCAGCCAGCCTATTACTGCTACAATTCCTCAGTCTTTAGCTACGCCTAATGCTGTACCTAATTCTAACAACTTTGGTACATGGACAATTGATATTACTGATCCTGCAATTTATAATACTATGCGTCCGTATCTTGTAGGTGTCTATGCCAAAAATGAAGAAACTGGTGCTACACTACCATGGTATGATAAGTATGATGAATTCAACGGACCTGGTACGTTGTCTCAATTTGGATCATCTGCGTCTAATGGCTCAGGTACATATCAAATTTGGGCCCCACGTCCGCCAGCAGATAAAGCAAATCTTCCTGGACATATTGCAGGAACTATGTGGTCCCGTCAATGGAATCCTGCAACAAATCGCTGGGATGGCTGGGGTAGAATGTTTACAAACAATCATCCGCCGTTACCACAAGATATTGGTGCTATGAGTAACAATGGTTCAGTCTTTGATTCTATGCGCATCAGAGATTGGATACAAATCGGCAATTTAAGAATCTATGCGAATCCAGAAACAAAAACTGTTCGCTTTGATTGGATAGAATAA

Title	Authors	Date	PMID	Source
Characterization of Acinetobacter phages for therapeutic use	Peters,D.L.	2022-09-29	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature