Phage RBP Database

Genbank accession

AND76103.1 [GenBank]

Protein name

short tail fibers protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,97

Protein sequence

MSTNTLKHISDKSEFKSFDPTGSNFPPDITNVQEALATISLIGVTGNVPSATETSQGIIRLATTQEVMDGLDAYSAVTPATLKARLDIPTQATETYVGITRYATNAEAIAGTEPQAAIVATSLKAVMDYTFENRLSTENATGVIKISTTPAALAGTDDTTAMTPLKVSQAIGAATAALPVYSTATTTNEGLVRLATNAEVGNGNLSVGIAISPAGLATLTSTEERSGIIKLAGWDMVSNGTDHTAAVTPASLLARTGNTGRIGLVRLSTTVGQGDGNTALAYNANVISTSGGEIWGTLNVNGALRRNGVDVVTHDQLSDSVPVGTICMWGGNEGNIPGKWRACVGGTYTGGAYLNAVGGRWGWWGAIPDFRGLYPRGANMVGGYSEGEVNPHIAGNRGQDGKGKARLGNGVGSFPQSSVQAQALRYHKHAGGFGEHDNYGAFGNTANSGYVGTRKGLDWDNRSYYTNEGFETTDPWNRDGHTTLNSEGLIANETRPWTMSVLFIIKVE

Physico‐chemical properties

protein length:	508 AA
molecular weight:	53074,27520 Da
isoelectric point:	5,47538
aromaticity:	0,06890
hydropathy:	-0,22028

Domain architecture

AND76103.1

1 508 aa

STR 248–309 · ATT 310–371 · STR 372–507 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.10.280.10
Unmapped

G3DSA:2.10.280.10 IPR037053 IPR044916

SSF69349
STR

SSF69349 IPR027448

IPR015173
STR

IPR015173 SSF88874

AND76103.1

1508 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0176
STR

DC_0176

AND76103.1

1508 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.10.280.10	Unmapped	-	248	285	Gene3D	None	-	-	-	-
SSF69349	STR	SSF69349	248	333	Merged direct domain	SSF69349	Central	Low	Positional only	153 proteins / 153 hits
IPR015173	STR	DC_0719	251	309	InterPro cluster	Bacteriophage T4, Gp12	Central	Low	Positional only	349 proteins / 349 hits
IPR037053	ATT	IPR037053	310	371	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
SSF88874	STR	SSF88874	313	507	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR044916	STR	IPR044916	372	500	Merged direct domain	Short tail fibre protein, C-terminal superfamily	Central	Low	Positional only	2 proteins / 2 hits
IPR027448	RBD	DC_0877	418	507	InterPro cluster	Short tail fibre protein, C-terminal	C-terminal	High	Text match	424 proteins / 427 hits

Proteins with similar domain architecture

Phage

Escherichia phage MX01 [NCBI] · taxon 1837930

Uroviricota Caudoviricetes Pantevenvirales Tevenvirinae Dhakavirus

Host

Escherichia coli [NCBI] · taxon 562

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

AND76103.1 [NCBI]

Genbank nucleotide accession

KU878969.1 [NCBI]

CDS location

range 88197 -> 89723
strand +

CDS

ATGTCAACAAACACACTAAAACACATTAGTGATAAATCGGAATTCAAATCATTCGACCCTACTGGGTCGAATTTCCCGCCTGATATTACTAATGTTCAAGAAGCATTGGCCACTATTTCATTAATCGGCGTCACAGGTAATGTTCCTTCAGCCACAGAAACATCCCAAGGTATTATTCGTCTGGCCACAACACAAGAAGTAATGGATGGATTGGATGCTTATAGTGCAGTGACCCCAGCAACTTTAAAAGCCCGTTTAGATATTCCTACTCAGGCAACAGAAACTTATGTAGGTATCACCCGTTACGCTACTAACGCTGAAGCCATTGCAGGCACAGAGCCCCAGGCTGCAATCGTAGCAACCTCTTTGAAAGCGGTAATGGATTATACATTTGAGAACCGTTTATCAACAGAGAACGCCACAGGCGTTATCAAGATTTCAACTACACCTGCTGCATTAGCTGGTACCGATGATACCACAGCGATGACCCCACTTAAAGTATCGCAAGCAATTGGTGCAGCGACAGCGGCATTACCGGTTTATTCTACGGCAACGACTACAAATGAAGGTCTAGTTCGTTTAGCGACTAATGCCGAAGTTGGTAATGGAAATCTTTCTGTAGGTATCGCTATTTCTCCAGCAGGATTGGCCACATTAACTTCCACCGAAGAACGAAGCGGTATTATTAAACTCGCCGGTTGGGATATGGTATCTAATGGCACCGACCACACCGCCGCTGTTACACCTGCTTCTTTGTTAGCTCGTACAGGTAATACCGGACGTATTGGGTTGGTTCGATTATCTACTACAGTAGGTCAAGGTGATGGTAATACGGCACTGGCTTATAATGCCAACGTTATTTCTACTTCAGGTGGTGAAATATGGGGTACTTTAAACGTTAATGGCGCATTACGTCGTAATGGTGTTGATGTTGTTACCCACGACCAATTATCAGATAGTGTTCCGGTCGGTACTATTTGTATGTGGGGCGGCAATGAAGGTAATATCCCTGGCAAATGGCGTGCTTGTGTAGGTGGGACTTACACTGGTGGTGCATATTTAAATGCTGTTGGTGGACGTTGGGGATGGTGGGGTGCTATTCCAGATTTCCGTGGATTATATCCTCGTGGCGCTAATATGGTTGGTGGATATTCTGAAGGTGAAGTTAACCCACATATTGCTGGTAACCGAGGACAAGACGGTAAAGGTAAGGCCCGTTTAGGCAACGGTGTTGGTTCGTTCCCACAATCTTCTGTTCAAGCCCAAGCGTTACGTTACCATAAACACGCCGGCGGTTTTGGTGAACATGATAACTATGGCGCTTTTGGCAACACAGCTAACTCCGGATATGTTGGCACTCGTAAAGGCCTTGACTGGGATAACCGTAGTTATTATACCAACGAAGGTTTTGAGACCACCGATCCTTGGAACCGTGATGGACATACCACATTGAATAGTGAAGGTCTTATTGCCAACGAAACACGTCCATGGACAATGTCCGTTCTTTTTATTATTAAAGTAGAATAA

Title	Authors	Date	PMID	Source
Genome analysis of T4 like phage of avian pathogenic Escherichia coli	Chen,M., Xu,J. and Zhang,W.	2021-08	—	GenBank

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature