Phage RBP Database

Genbank accession

UGO54078.1 [GenBank]

Protein name

tail spike protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 1,00

Protein sequence

MVDQVKISELGKATVVRESDAIPLNNTTTRGLPITRQADITNIRSAILFNDAFNSIEEGLDITNNGDSFYVYNDADKLTVARYLKINDVASPVVGENGKQIIEGTGIALKTIGDLGGPFGFGVVGRVDSYDSLRNLVPTKEGQVVYLNGFHSGSHLGGGAFISSLTYSVDDGGTVASVSNGNYSWKRLLGNEINLEMFGAVGDGVNVDNDSIDNALAFCKLNGKSDNNIIVKLTRNYRVNKSFELTSFTSIIGPGEIFIDSQDLTLILFTGSDLESLLIQGLIISRAVDKPATMWSKGATAIQLTRVKDLTIRDNDISLQTDAISVSNSDRVLIENNKTHELGEEGIAIRSSRNFIVRGNHVFHHHGDGILMKTGNIECHDGQIVDNFVYDGLIDPVAAVGQRGGGITLNDENINGAGGSSTTMDGLVVSRNTCRNLSYGIAFNNLTSAVIQGNIITGVTRFGLVIDTTPFNNPALNPVLRFSVSGNILKDIGEVGIGFRSNRGITVDYVSVTGNVIENAGYKTNGDFPSLDIGTGTVTGNTVVNGRVAIMASGNALINANQFIGSPFTSPGANSVWIKLSESVTFSNNLVKDTNMGHIRMSATKNMIFTNNNIDTASTYGVLAFVTSGLPYGHSMFRDNIYITKAPSVCNFTIGADSIRSLGLSRAEFGNNDYMYDSTLSSLVNYKKGDRISLVAPEGGASTYVVIDETGKKAAVEFTPYYVKSNTFTQSVPANGTAVIVAQDSKVKGTWAVGKVWCSVNRNGVMIQCDCTKDGEVTIRFVNTTAATVTLTNAVVTLECFEMPNI

Physico‐chemical properties

protein length:	806 AA
molecular weight:	86222,95840 Da
isoelectric point:	5,26678
aromaticity:	0,07444
hydropathy:	-0,03065

Domain architecture

UGO54078.1

1 806 aa

STR 192–649 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR012334
STR

IPR012334 IPR006626 IPR006626

IPR011050
STR

IPR011050 IPR039448

IPR039448
ENZ

IPR039448 IPR006626 IPR006626 IPR006626

IPR006626
Unmapped

IPR006626 IPR006626 IPR006626 IPR011050

UGO54078.1

1806 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0098
STR

DC_0098

UGO54078.1

1806 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR012334	STR	IPR012334	192	491	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	201	491	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR039448	ENZ	DC_0799	298	413	InterPro cluster	Right handed beta helix domain	C-terminal	High	Text match	178 proteins / 183 hits
IPR006626	Unmapped	-	307	328	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	329	351	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	352	374	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	424	445	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	446	468	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	479	501	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR011050	STR	IPR011050	482	649	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR006626	Unmapped	-	533	554	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR039448	ENZ	DC_0799	537	628	InterPro cluster	Right handed beta helix domain	C-terminal	High	Text match	178 proteins / 183 hits
IPR006626	Unmapped	-	604	626	InterPro	Parallel beta-helix repeat	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

UGO54078.1

1 806 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	209	209	0,9922
Central domain	210	672	464	0,9916
C-terminal	673	806	133	0,9755

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Serratia phage vB_SmaM_Haymo [NCBI] · taxon 2902685

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host No host information

Genbank protein accession

UGO54078.1 [NCBI]

Genbank nucleotide accession

OL539468.1 [NCBI]

CDS location

range 107870 -> 110290
strand +

CDS

ATGGTTGATCAGGTTAAAATATCTGAGCTAGGTAAGGCTACCGTTGTACGGGAAAGTGATGCTATCCCGCTGAATAATACAACCACGCGAGGTTTGCCGATTACCAGACAGGCTGATATTACCAATATTCGTTCTGCAATATTGTTCAATGACGCATTCAACAGTATCGAAGAAGGATTAGATATTACTAATAACGGCGACTCTTTCTACGTCTATAACGATGCAGATAAGTTAACAGTTGCTCGGTATTTGAAAATAAACGACGTCGCCAGTCCTGTTGTTGGTGAAAACGGGAAACAGATTATAGAGGGCACGGGTATCGCACTTAAGACTATAGGTGACCTAGGCGGCCCGTTTGGTTTCGGAGTTGTTGGACGAGTAGACTCCTACGATTCATTGCGTAATTTAGTACCTACTAAAGAGGGTCAGGTAGTTTACCTCAACGGATTTCATTCCGGTAGCCATTTAGGCGGGGGTGCATTTATATCCTCGCTAACCTACTCAGTCGATGACGGTGGTACGGTCGCATCTGTCAGTAATGGTAATTACTCATGGAAACGTCTGTTAGGTAATGAAATAAACTTAGAGATGTTCGGCGCAGTCGGTGATGGCGTAAATGTAGATAATGACTCGATAGACAATGCTTTGGCGTTTTGTAAGCTCAACGGAAAAAGTGATAATAACATCATTGTTAAGTTGACTAGAAACTACAGGGTAAATAAGTCTTTTGAGTTGACAAGCTTTACATCCATCATCGGTCCAGGGGAAATCTTTATTGACTCCCAAGACCTTACTCTGATATTATTCACCGGATCAGACTTAGAGTCACTTCTTATTCAAGGGTTGATTATCAGCAGGGCTGTCGATAAACCGGCTACTATGTGGAGTAAGGGCGCAACTGCTATCCAGTTGACTCGGGTAAAAGACTTGACTATTCGGGACAACGATATCTCGTTACAAACCGACGCTATCTCGGTAAGTAACTCCGACCGAGTCCTGATTGAAAACAACAAAACGCACGAATTAGGCGAAGAAGGTATTGCCATCCGTAGCAGCCGTAACTTTATTGTCAGAGGTAACCACGTCTTCCACCATCACGGAGATGGGATTTTAATGAAGACGGGTAACATCGAGTGCCACGATGGTCAGATAGTAGATAACTTCGTTTATGATGGTCTGATCGATCCAGTTGCCGCTGTCGGTCAACGCGGCGGTGGTATAACTCTTAATGACGAAAATATTAACGGTGCCGGCGGATCTAGTACCACGATGGACGGATTAGTCGTTTCTCGTAATACCTGTCGTAATTTGAGCTATGGTATAGCGTTCAATAACTTAACCAGCGCGGTTATCCAAGGTAACATCATTACTGGCGTCACGCGATTCGGTTTAGTTATTGATACCACGCCATTCAATAACCCTGCACTTAACCCAGTATTACGTTTCTCAGTAAGTGGCAACATCCTAAAGGATATTGGCGAGGTTGGTATCGGGTTCCGTTCAAACCGTGGCATTACGGTAGATTATGTTAGTGTAACAGGTAACGTAATTGAGAATGCCGGCTACAAGACTAATGGCGATTTCCCATCGTTAGACATCGGTACCGGTACTGTAACTGGGAATACAGTAGTCAATGGTAGAGTAGCTATCATGGCCTCCGGGAACGCGTTAATTAACGCTAACCAATTTATCGGATCTCCGTTTACTTCCCCAGGCGCTAACTCGGTATGGATAAAATTATCTGAATCGGTGACCTTCAGTAACAACTTAGTGAAGGATACCAATATGGGTCATATTCGGATGTCAGCAACTAAGAATATGATCTTCACTAACAACAACATCGATACAGCGAGTACGTACGGTGTTCTGGCGTTCGTCACTTCCGGGCTACCTTACGGTCATTCCATGTTCCGAGATAATATTTATATTACCAAGGCCCCTTCGGTATGTAACTTTACCATCGGTGCTGACTCTATCAGGTCCTTAGGGTTGAGTAGGGCTGAGTTTGGTAACAACGACTACATGTACGACTCGACTTTATCTTCCCTGGTTAACTACAAAAAGGGCGATCGCATTTCCTTAGTTGCCCCAGAGGGAGGAGCGAGTACTTACGTAGTTATCGATGAAACTGGTAAAAAGGCCGCTGTTGAGTTCACTCCGTATTACGTCAAGTCTAATACGTTTACTCAATCGGTACCGGCCAACGGGACTGCGGTGATCGTGGCACAAGATTCAAAAGTTAAAGGTACCTGGGCCGTCGGTAAAGTTTGGTGTTCGGTCAATCGTAATGGTGTAATGATTCAGTGCGATTGCACCAAGGATGGGGAAGTAACGATTCGATTTGTTAACACGACTGCTGCTACAGTGACGTTGACTAACGCAGTTGTTACACTAGAATGTTTTGAGATGCCTAACATTTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)