Protein

View in Explore
Genbank accession
BAP15843.1 [GenBank]
Protein name
putative phage-related tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,95
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MADVTITPWIDAGDPDGLKYSMNRFQCNGTANVFSINFAGAAPGYLDRAHLKYYVINGADGTYVTPITPVPSGAFQSSTLIKLEQTPGVPYPLGLWVVIFRDTPKSVPLVDFTDGAVINEENLDLMAEQSIYVAAEMTDRFEEVIGSNQEVIDRAAEALATANEALDASAATTIVANDAAAQAAAADGKADTAVSTANTAKATAEGIDAKAQSALDASAAATATANAANATAANALDVAQDALDQVQASAMPTTGGTFTGPVYGITPTAGDSSTKLATTAFVTSAISTALVGQIVFEARTSARAGYLKLNGALLNRADYPALWAYANASGAVVSEGVWSAGSQGCFSSGDGTTTFRVPDLRGEFVRGWDDARGVDGSRGIGTWQASANLSHNHTASTDVQGSHNHSAWTDGQGWHGHGVSDPGHSHFGGLQTFAGGGQGASGSPNFVNQRWVDGSGTGIGINGDGTHGHNVGIGYAGDHGHNITVNANGASEARPRNVALLALIRYL
Physico‐chemical
properties
protein length:507 AA
molecular weight: 51980,33720 Da
isoelectric point:4,74972
aromaticity:0,07495
hydropathy:-0,11361

Domains

Domains [InterPro]
IPR005604
20–148
IPR005604 SSF88874
IPR037053
290–366
IPR037053
BAP15843.1
1 507
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RSJ2
[NCBI] 		1481785 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ralstonia solanacearum
[NCBI] 		305 Bacteria > Proteobacteria > Betaproteobacteria > Burkholderiales > Burkholderiaceae > Ralstonia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAP15843.1 [NCBI]
Genbank nucleotide accession
AB920995 [NCBI]
CDS location
range 38066 -> 39589
strand +
CDS
ATGGCTGACGTGACCATCACGCCGTGGATCGACGCTGGTGATCCTGACGGCCTCAAGTATTCAATGAACCGTTTCCAGTGCAATGGCACCGCGAACGTGTTCAGCATCAACTTCGCAGGCGCGGCCCCGGGCTACCTTGACCGGGCGCACCTCAAGTATTACGTCATCAACGGTGCTGACGGCACCTACGTGACTCCGATTACCCCGGTGCCATCAGGCGCATTCCAGTCGAGCACGCTCATCAAGCTGGAGCAGACACCCGGGGTGCCTTATCCGCTTGGTCTATGGGTGGTGATCTTCCGAGACACACCCAAGTCCGTGCCGCTGGTGGACTTCACGGATGGCGCAGTTATCAACGAGGAAAACCTCGACCTGATGGCAGAGCAGTCCATCTACGTGGCCGCTGAAATGACCGACCGCTTTGAGGAGGTCATTGGCAGTAACCAAGAGGTGATCGACCGTGCGGCCGAGGCTCTGGCTACGGCTAACGAGGCGCTGGACGCTTCCGCCGCTACGACCATCGTGGCTAACGACGCCGCTGCTCAAGCCGCTGCCGCTGACGGCAAGGCCGACACTGCTGTGTCCACTGCTAATACCGCCAAGGCTACCGCCGAGGGCATTGACGCCAAGGCACAGAGCGCGCTGGACGCATCTGCTGCTGCGACCGCTACGGCTAACGCCGCCAACGCCACCGCCGCTAACGCGCTGGACGTGGCACAGGACGCGCTGGATCAGGTGCAGGCTTCGGCCATGCCGACCACGGGTGGCACGTTCACCGGCCCGGTCTATGGTATCACGCCTACCGCCGGGGATAGCTCGACCAAGCTGGCAACCACCGCATTCGTCACTAGCGCTATCAGCACCGCACTGGTGGGCCAGATCGTATTCGAGGCCCGCACCTCGGCCCGCGCTGGCTACCTCAAGCTGAACGGTGCGCTGCTTAATCGCGCAGACTACCCGGCCCTGTGGGCTTACGCCAATGCGAGCGGTGCTGTGGTATCCGAAGGCGTCTGGTCTGCGGGCAGTCAAGGCTGCTTTAGCTCCGGCGACGGCACCACTACCTTCCGCGTTCCTGACCTCCGTGGCGAATTCGTTCGCGGATGGGATGACGCCCGTGGTGTGGATGGCTCGCGTGGCATCGGTACGTGGCAAGCTAGCGCGAATCTCTCGCACAACCATACGGCCAGTACCGATGTGCAAGGCAGTCACAACCACTCTGCGTGGACGGACGGCCAAGGCTGGCACGGGCACGGTGTAAGCGACCCGGGGCACAGCCACTTTGGTGGTCTGCAAACCTTCGCTGGTGGTGGTCAAGGTGCATCCGGCTCGCCCAACTTTGTGAACCAGCGTTGGGTGGACGGATCGGGCACTGGTATCGGCATTAACGGCGACGGCACGCACGGGCACAACGTGGGTATCGGCTACGCTGGCGACCACGGCCACAACATCACAGTCAACGCTAACGGAGCATCCGAGGCGCGTCCACGAAACGTGGCGCTGCTGGCTCTGATCCGCTACCTGTAA

Tertiary structure

PDB ID
38742dd63e033d28e208715051e130b8508cf221875ea396e2bb362f4abf0a04
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7844
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of bacteriophages infecting R. solanacearum from Thailand Narulita,E., Kawasaki,T., Fujie,M. and Yamada,T. 2015-02-13 — GenBank