Phage RBP Database

Genbank accession

XUS44884.1 [GenBank]

Protein name

tail protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,89

Protein sequence

MTGHAPFDANNDWTSPYCDNTSNDPLVDKMIGNAYNVVRTVYCNLGNLKPIYDFLNQYGMVLGVKSEAELKALTVKATYARLYDKDNTGKLQVKDYLYVADDTTGIIPDDTSATGSWLLVNVPGTFEENIGSGNGSSYIPYIYNNGSAIGGETTIPVPAQTVGVAYIIKNHETYINTLGFTYDATTLTVTLDTPLVADDEVILLLAGTPAVPSNPNITDWVQVNWLYNGGYAVGGEQVIAIPYTFQSIPAIFKNGLRYVQGLAAQSYTVDAPNQRILLTEPLATNDQLVVQVGGESITFIMSDRTIQEIARSVNVKDSEVILSSNTTQYLNGMKVVYDVVAEKSYGLPVLPANVYINTVGDGKLTYSPGNITVDLLPAPYPPLTSLAEYKATLASKYGTSNIGHMSPLAASIERSLQLKLADVINIKDFGAVGDGELHPLSEKFSTLSAAQMVYPFVTSLTQSQDYAGTQAAINAAKVGYAVFSPSGKYEINKSIQVDYALCMYGEGAQGLRTVASVHSPSPVRGTVFNSHVATGRMLSIDSGSAYCFGLTLRDFAIWGVDGQCDVGLYLNGIGWMGIVEGVNIQFFPNQALEIGYIQDTYFTNCSFLQSGNVTNPAVTMIQDSNYVYFTGCHFEFNPYMLKFGNPWFVFFNHCHFEVARPVGDNTLADRFYYTKAPIWITCVTGQRLHQYSR

Physico‐chemical properties

protein length:	693 AA
molecular weight:	75592,43300 Da
isoelectric point:	4,81110
aromaticity:	0,11400
hydropathy:	-0,01097

Domain architecture

XUS44884.1

1 693 aa

ATT 299–379 · STR 384–660 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR018247
Unmapped

IPR018247 G3DSA:3.30.2020.50 IPR012334

IPR011050
STR

IPR011050

XUS44884.1

1693 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0265
STR

DC_0265

XUS44884.1

1693 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR018247	Unmapped	-	84	96	InterPro	EF-Hand 1, calcium-binding site	-	-	-	-
G3DSA:3.30.2020.50	ATT	G3DSA:3.30.2020.50	299	379	Merged direct domain	G3DSA:3.30.2020.50	N-terminal	Low	Positional only	289 proteins / 289 hits
IPR012334	STR	IPR012334	384	652	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	463	660	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XUS44884.1

1 693 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	464	464	0,9969
Central domain	465	682	219	0,9972
C-terminal	683	693	10	0,6124

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Escherichia phage Jgk1 [NCBI] · taxon 3410910

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Escherichia coli [NCBI] · taxon 562

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

XUS44884.1 [NCBI]

Genbank nucleotide accession

PV292302 [NCBI]

CDS location

range 66290 -> 68371
strand -

CDS

ATGACAGGACATGCTCCTTTCGATGCAAATAACGACTGGACTAGCCCATATTGCGACAATACTTCTAACGACCCATTGGTCGATAAAATGATTGGCAACGCATATAACGTGGTTCGTACAGTTTACTGCAATCTTGGTAATCTGAAACCTATCTACGACTTCCTGAACCAATACGGTATGGTTTTGGGTGTTAAGTCAGAAGCAGAGTTGAAAGCTTTAACTGTTAAGGCTACCTATGCTCGACTGTATGACAAGGACAATACAGGTAAGCTGCAAGTAAAAGATTATCTGTATGTAGCTGACGATACTACTGGCATCATCCCAGACGACACCTCTGCCACTGGTTCATGGTTACTGGTTAATGTACCGGGAACATTTGAGGAAAACATTGGCTCTGGTAATGGTTCCTCTTACATTCCTTATATCTATAACAATGGTTCGGCTATTGGGGGCGAAACTACTATACCTGTTCCCGCTCAAACTGTTGGTGTTGCTTACATCATCAAGAACCACGAAACCTACATTAACACGTTAGGTTTTACTTATGATGCTACTACTCTGACTGTTACCTTGGATACTCCGTTAGTAGCTGATGATGAGGTTATCCTGCTCCTGGCTGGTACTCCAGCAGTACCAAGCAACCCTAATATTACGGATTGGGTTCAGGTTAACTGGCTATACAATGGGGGTTATGCTGTAGGTGGGGAGCAGGTTATTGCTATTCCTTATACCTTCCAGTCTATTCCGGCTATTTTTAAGAATGGACTGAGATATGTACAAGGTTTGGCTGCCCAATCTTATACAGTAGATGCCCCTAATCAGCGTATTTTACTGACGGAGCCATTGGCTACCAATGACCAATTGGTTGTGCAGGTTGGTGGTGAGTCTATTACTTTCATCATGTCTGACCGTACCATCCAGGAAATAGCACGCTCAGTTAATGTTAAGGATTCTGAAGTAATTCTTAGTTCTAACACTACTCAGTATCTTAATGGTATGAAAGTTGTCTACGATGTGGTTGCTGAGAAGTCTTATGGATTACCTGTGTTACCGGCCAACGTTTACATCAATACAGTCGGTGACGGTAAGTTAACCTATTCACCAGGTAACATTACTGTTGATTTGTTGCCTGCACCGTATCCACCACTAACTTCACTTGCTGAGTATAAAGCAACGCTGGCATCTAAGTATGGTACTTCCAACATTGGGCATATGTCCCCATTGGCTGCATCAATTGAACGTAGTCTCCAGCTTAAACTGGCGGATGTAATTAATATCAAGGACTTCGGTGCTGTAGGGGATGGTGAACTACACCCATTAAGTGAAAAGTTTAGCACCCTATCTGCTGCACAAATGGTATATCCATTTGTAACTAGCTTAACTCAGAGCCAAGATTATGCAGGTACGCAGGCAGCAATCAATGCTGCTAAGGTGGGTTATGCTGTATTTTCTCCATCTGGTAAGTATGAAATTAATAAATCTATTCAGGTGGATTACGCTCTGTGCATGTATGGTGAGGGTGCTCAAGGTTTGAGGACTGTAGCTTCTGTACATTCCCCTTCCCCTGTACGAGGTACAGTATTTAACTCCCATGTAGCAACTGGTCGAATGTTATCTATTGATTCTGGTTCGGCTTACTGCTTTGGACTTACCTTACGTGATTTTGCTATTTGGGGGGTTGATGGTCAGTGTGATGTGGGTTTGTATCTTAATGGTATTGGTTGGATGGGTATTGTTGAGGGAGTTAACATACAATTCTTCCCGAACCAGGCACTAGAAATTGGGTACATTCAGGATACCTATTTTACTAACTGTTCTTTCCTACAAAGCGGTAATGTTACTAACCCTGCTGTGACCATGATTCAGGATAGTAACTACGTATACTTCACTGGTTGTCATTTTGAGTTTAATCCCTACATGCTTAAATTTGGTAACCCATGGTTCGTGTTCTTTAATCACTGTCACTTTGAGGTTGCTAGACCTGTTGGTGATAACACCCTAGCTGACCGTTTTTACTATACCAAGGCTCCTATATGGATTACCTGTGTTACCGGCCAACGTTTACATCAATACAGTCGGTGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)