Phage RBP Database

Genbank accession

AFX93664.1 [GenBank]

Protein name

putative phage tail fiber

RBP type

TF

Evidence RBPdetect

Probability 0,88

Protein sequence

MPKIKILVTPYVVKNKPETERNHVVTGVADGWEKTSLNADPNEILTESKGLDTLLTDCNLKPDGVTKIDPSKPIGKEVEIEIYDPDAIPVQTVTVTPDTATGTVGQQLTFTADILPADATYKDVEWSSSDEAKAKSLGNGVFDLKAVGTGIIVSATSIDGGVIGEAELTITAAVVAVTGVTLSPKTKTIAVGEKFTLAATVAPANATNKTVTYTSADPATATVNATTGEVEGKASGTAAITGKTADGNKTDVCTVTVS

Physico‐chemical properties

protein length:	258 AA
molecular weight:	26506,51220 Da
isoelectric point:	4,61359
aromaticity:	0,03488
hydropathy:	-0,05039

Domain architecture

AFX93664.1

1 258 aa

STR 86–258

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.60.40.1080
STR

G3DSA:2.60.40.1080 G3DSA:2.60.40.1080

IPR008964
RBD

IPR008964 IPR008964

IPR003343
STR

IPR003343 IPR003343

IPR003343
STR

IPR003343 IPR003343

AFX93664.1

1258 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0078
STR

DC_0078 DC_1711

AFX93664.1

1258 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	86	172	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR008964	RBD	IPR008964	87	159	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR003343	STR	DC_0008	89	149	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR003343	STR	DC_0008	89	167	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	173	258	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR008964	RBD	IPR008964	174	257	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR003343	STR	DC_0008	176	255	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR003343	STR	DC_0008	176	254	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits

Proteins with similar domain architecture

Phage

Serratia phage phiMAM1 [NCBI] · taxon 1262513

Uroviricota Caudoviricetes Pantevenvirales Miltonvirus Miltonvirus MAM1

Host

Serratia sp. [NCBI] · taxon 616

Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Serratia

Genbank protein accession

AFX93664.1 [NCBI]

Genbank nucleotide accession

JX878496 [NCBI]

CDS location

range 154527 -> 155303
strand -

CDS

ATGCCAAAGATAAAGATCCTTGTGACGCCTTATGTCGTCAAAAACAAGCCTGAGACCGAGCGTAACCACGTCGTGACAGGCGTTGCTGATGGTTGGGAAAAGACCAGCCTGAATGCAGACCCCAACGAAATCCTGACCGAGTCCAAAGGGCTGGATACTCTGTTGACCGACTGCAACCTGAAGCCTGACGGTGTTACTAAGATCGACCCAAGCAAGCCGATCGGTAAAGAAGTCGAGATCGAGATCTACGATCCAGACGCCATCCCGGTTCAGACCGTAACCGTGACCCCTGATACTGCAACCGGCACCGTCGGCCAACAGCTGACCTTCACCGCTGATATCCTGCCTGCCGACGCCACCTACAAAGATGTTGAGTGGTCTAGCTCTGACGAAGCGAAAGCCAAGTCACTGGGCAACGGCGTGTTCGATCTGAAAGCTGTTGGCACTGGCATCATCGTGTCTGCGACTTCCATTGACGGCGGCGTAATCGGTGAAGCCGAGCTGACCATCACTGCAGCTGTGGTTGCCGTGACTGGTGTGACTCTGTCTCCTAAGACGAAGACCATCGCGGTGGGTGAGAAGTTCACTCTGGCTGCAACCGTGGCTCCAGCGAACGCCACCAACAAAACTGTTACCTACACCAGCGCCGATCCGGCGACTGCTACTGTCAACGCCACCACTGGTGAAGTTGAAGGTAAAGCGTCGGGCACTGCTGCCATCACCGGTAAAACCGCTGACGGTAACAAAACTGACGTCTGTACTGTAACGGTGTCGTGA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)