Protein

View in Explore
Genbank accession
YP_009845962.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 1,00
Protein sequence
MADIQLKYLQDLEAAGGVAATDLMHVSQSGLDRSVTVSVLMRFMTDAFFPVGSVMLRSDAKNPNTMLPGTTWVRLAAGRNIRIAAENGSDVLNIGGADDVTLTGNNLPSHSHAFQNGATNQAGNHTHNVWTGNSGSHTHGAYTDAQGNHAHRAWTDAQGQHQHGVGIRNPSNYGGSGGYYGVRGIGLGSGAWAQGGGQTGSESLTSADGNHSHNVGMDAAGNHGHNITVNAVGDHAHAAAMDERGAHTHTVTGTIGSTGNNASFSVVNAYVNLAAWRRTQ
Physico‐chemical
properties
protein length:280 AA
molecular weight: 29020,20410 Da
isoelectric point:6,41544
aromaticity:0,05714
hydropathy:-0,41250

Domains

View on InterPro
Domain architecture
YP_009845962.1
1 280 aa
ATT 44–152 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009845962.1
1 280 aa
Domain Start End Length (AA) Confidence
N-terminal 1 46 46 0,9947
Central domain 47 245 200 0,0051
C-terminal 246 280 34 0,9978
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Pantoea phage vB_PagM_PSKM [NCBI] · taxon 2588094
Uroviricota Caudoviricetes Dibbivirus
Host
Pantoea agglomerans [NCBI] · taxon 549
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Coding sequence (CDS)

Genbank protein accession
YP_009845962.1 [NCBI]
Genbank nucleotide accession
NC_048767 [NCBI]
CDS location
range 22572 -> 23414
strand +
CDS
ATGGCTGATATTCAACTAAAGTACCTACAGGATCTTGAGGCCGCTGGCGGAGTTGCGGCTACGGACCTGATGCACGTAAGCCAATCAGGCTTAGACAGATCCGTTACCGTGTCAGTGCTGATGCGGTTTATGACTGATGCGTTTTTCCCGGTAGGCTCCGTCATGCTGAGATCTGACGCGAAGAACCCTAATACGATGCTACCCGGCACGACTTGGGTTAGGCTGGCGGCTGGTCGCAATATCAGGATCGCCGCTGAGAATGGCTCAGACGTTCTCAACATCGGCGGGGCTGATGATGTTACTTTGACCGGCAACAACCTTCCATCGCACAGCCACGCATTCCAAAACGGTGCGACAAACCAGGCCGGGAACCACACGCACAACGTTTGGACAGGTAACTCAGGGAGCCACACTCACGGCGCATACACTGATGCGCAGGGCAACCACGCGCACCGGGCATGGACTGATGCGCAAGGGCAGCACCAACACGGCGTTGGTATCCGTAACCCGTCGAACTACGGCGGATCAGGCGGTTACTATGGCGTGAGGGGTATTGGTCTCGGATCTGGTGCTTGGGCGCAGGGCGGGGGCCAGACAGGAAGCGAATCACTGACCAGCGCCGATGGAAACCACTCGCACAACGTCGGGATGGATGCGGCCGGTAACCACGGTCATAACATCACTGTGAACGCAGTTGGCGATCACGCTCACGCAGCGGCGATGGATGAGCGAGGCGCGCACACTCACACGGTTACAGGTACGATTGGCAGTACCGGTAATAATGCGTCGTTCTCAGTTGTTAACGCTTATGTTAATCTAGCGGCCTGGCGACGTACTCAATAA

Genome Context

Tertiary structure

YP_009845962.1
ESMFold structure
Source ESMFold
pLDDT 75.0
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Complete genome sequence of Pantoea sp. infecting bacteriophage vB_PagM_PSKM Truncaite,L., Simoliuniene,M., Zajanckauskaite,A., Meskys,R. and Simoliunas,E. 2012-05 — GenBank