Protein

View in Explore
Genbank accession
YP_004957911.1 [GenBank]
Protein name
putative virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSTAYMLEHTQEKAPLVDYAIKNMWGNPELDSQFQIKLARVSGPQGFVNDFAYLGKQRYLPKTLTFFHVFTLGGLDAGFWNFGSRGKSWYPMDQWVRASNIATDRGVVIDVYKGDGSMFPRGETYIMPCFDGVTLVCVPINPNFPLPLDKNLYIHCYSSDINTKNLSPENKRKYTVAYSGGIYIQHEDMERVKLNYDSWKAYDMGMVAFFHNGKIVPIDSISLQPGDLIEAFYDPSIEMILKYKYKSMPDYLSDLDKKRKIILFPGFDDLPKMYRYYDDCHFYITNRRNNHSYYYHRNTEDSVRQLTHQDYGMTADYIEFLANRLIKDDTTKKTTMDDIDITVAYHATRWQFKLGPTSSRINDLYLLEDHSKILQAMTGSNSNITEWTAIELEKSPTNKVLNAICPKLTTEMVRDGLGYNGCSVAMSNNAHYMPWKTPGDPDHDPIYPTPPYTSGLGYTVPPTFVESSTAYEYDADGLLLRLVGITNQEYYAPGEGCTYVEYALGRATTWLDYIITKRDVKLKPNYGFRVYKAKWAIDPNWEPLFQEIPVSTDGVIPSLPNGEEIRALMRDEIPEQVDPELPEGGRPVPPWIDITDEVDQWHIDGDYLVWDIDMINWVGLIVFDSAHLYNEFDLSHIDNSLTFAITHQWPIGGVLLPMEPGQIDIWMNRHPLIENVDYILDFPNVYIINKMWLVEGKQHIQYRGVGLSRNGLVNTSELGFVADGVIGYNGRYNLRIDRPTKTIIKGRLFLTPTVDWAEDIHHGNNLVGLNGWPYEVKHYYSANKYVDKWNTYWGYDDARALDKKISDYLTIHATYKSNAPHNPVYLDKDKYRLYSPFLSLIVNELLLGFMTAPVPSGTEVPYPPRLVDEITRPYQWLLKYDPIILGLDLGYFTVHPYNNWDKVTLTPDQLTFVKTVNDLFLDGKLKIEGHFEVKHV
Physico‐chemical
properties
protein length:936 AA
molecular weight: 107890,19830 Da
isoelectric point:5,35858
aromaticity:0,13248
hydropathy:-0,38397

Domains

View on InterPro
Domain architecture
YP_004957911.1
1 936 aa
STR 11–935 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_004957911.1
1 936 aa
Domain Start End Length (AA) Confidence
N-terminal 1 49 49 0,5104
Central domain 50 284 236 0,7641
C-terminal 285 936 651 0,0704
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Pseudomonas phage OBP [NCBI] · taxon 1124849
Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes
Host
Pseudomonas fluorescens [NCBI] · taxon 294
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales

Coding sequence (CDS)

Genbank protein accession
YP_004957911.1 [NCBI]
Genbank nucleotide accession
NC_016571 [NCBI]
CDS location
range 4124 -> 6934
strand +
CDS
ATGTCGACTGCATACATGCTTGAGCACACCCAAGAAAAAGCCCCACTTGTTGATTACGCAATTAAAAACATGTGGGGTAACCCTGAACTTGATTCACAGTTCCAGATTAAACTGGCGCGTGTATCTGGGCCCCAAGGTTTTGTAAACGACTTCGCATACTTAGGTAAGCAGAGATACCTGCCTAAGACTTTAACCTTTTTTCATGTCTTCACTTTAGGTGGACTTGATGCTGGTTTCTGGAATTTCGGTAGTCGTGGCAAAAGCTGGTACCCGATGGATCAGTGGGTTCGTGCTTCTAACATTGCCACAGATCGTGGCGTTGTAATTGATGTATATAAAGGTGATGGTTCGATGTTCCCTCGTGGTGAGACATATATCATGCCTTGCTTCGATGGTGTCACATTAGTCTGTGTTCCTATTAACCCGAACTTCCCGTTACCATTGGATAAGAACCTTTATATCCACTGTTACAGTTCGGACATTAATACGAAGAACCTGTCTCCAGAAAACAAACGTAAATATACGGTTGCTTATTCTGGCGGTATCTATATCCAACATGAGGATATGGAAAGAGTTAAGTTAAACTATGACTCTTGGAAAGCCTATGACATGGGAATGGTTGCTTTCTTCCATAACGGTAAGATCGTACCTATCGACTCCATAAGCCTACAGCCGGGTGATTTGATTGAGGCGTTTTACGACCCTTCCATCGAAATGATCCTGAAGTACAAATACAAATCGATGCCGGACTATTTGTCTGATCTCGATAAGAAAAGAAAAATCATTCTTTTCCCTGGTTTTGATGATTTACCGAAGATGTATCGTTATTATGACGATTGCCACTTCTATATTACTAACCGTCGGAACAATCATTCTTATTACTATCACCGTAATACGGAAGACTCAGTTAGACAGTTAACTCATCAAGACTATGGCATGACTGCCGACTACATTGAGTTCTTGGCTAATCGTCTTATTAAGGATGACACAACCAAGAAAACCACAATGGATGATATTGATATCACTGTGGCTTACCATGCGACTCGTTGGCAGTTTAAATTGGGACCAACCTCTTCTCGCATTAACGATCTGTATTTGTTAGAAGATCATAGCAAGATACTTCAGGCGATGACAGGTTCTAATTCCAATATCACGGAATGGACTGCGATTGAATTAGAGAAGTCTCCAACTAACAAAGTTCTGAATGCCATCTGTCCTAAGCTGACCACTGAGATGGTTCGTGATGGGTTGGGTTATAATGGGTGTTCTGTTGCGATGTCTAACAACGCACACTACATGCCTTGGAAAACTCCAGGGGATCCTGACCATGACCCTATCTATCCAACACCTCCTTATACCTCAGGGCTAGGGTACACCGTCCCTCCGACGTTTGTAGAGAGTTCTACTGCATACGAGTATGATGCTGATGGATTACTCCTGAGACTGGTTGGAATTACCAACCAAGAGTATTACGCCCCGGGTGAAGGTTGTACTTATGTGGAATACGCTTTAGGGCGAGCAACCACTTGGCTGGACTACATCATCACCAAGCGTGATGTCAAACTGAAACCTAACTATGGCTTCAGAGTCTATAAAGCTAAATGGGCTATCGATCCTAATTGGGAACCTCTCTTCCAGGAAATCCCTGTTAGTACTGATGGTGTTATCCCAAGCCTTCCTAACGGCGAGGAGATCAGAGCGCTGATGCGTGATGAAATCCCTGAGCAAGTTGATCCTGAATTACCAGAAGGTGGACGCCCAGTCCCTCCATGGATTGATATCACTGATGAAGTAGATCAGTGGCACATCGATGGTGACTACCTGGTATGGGATATTGACATGATCAACTGGGTTGGTTTAATTGTGTTTGACTCTGCTCATTTGTATAATGAGTTTGATCTCTCTCACATCGATAACTCTTTGACCTTTGCCATTACACACCAATGGCCAATCGGTGGTGTACTGCTTCCGATGGAACCAGGTCAGATTGATATCTGGATGAACCGACATCCTCTAATTGAGAACGTTGACTATATCTTAGATTTCCCCAATGTCTACATCATCAACAAGATGTGGTTGGTAGAAGGGAAACAGCATATCCAGTATCGTGGTGTAGGGCTCTCCCGTAATGGGTTGGTTAATACCAGTGAGCTTGGTTTTGTTGCAGATGGTGTTATCGGCTATAATGGTCGTTATAACCTCCGCATCGACAGACCAACTAAAACGATTATCAAAGGTCGTCTGTTCTTAACACCGACTGTTGACTGGGCTGAAGATATTCATCATGGTAATAACCTGGTTGGGTTAAATGGTTGGCCTTACGAGGTTAAGCATTATTACTCAGCTAACAAGTATGTAGACAAATGGAATACGTACTGGGGTTATGATGATGCACGGGCTCTCGATAAGAAGATCTCTGATTACTTAACCATTCATGCAACCTACAAGTCTAATGCTCCTCACAATCCGGTTTATCTGGATAAAGATAAGTACAGACTTTATAGTCCGTTCCTGAGTCTCATCGTGAACGAGCTATTACTTGGATTCATGACGGCTCCAGTTCCTTCTGGAACAGAGGTTCCGTATCCTCCAAGACTGGTTGATGAAATCACTCGCCCTTATCAATGGTTGTTGAAATACGATCCGATCATTCTTGGTCTGGACTTGGGATACTTCACAGTACACCCTTACAACAACTGGGATAAAGTCACATTAACACCCGACCAACTTACTTTCGTTAAAACCGTCAATGATTTGTTCCTAGATGGGAAACTTAAGATTGAAGGTCACTTTGAGGTGAAACATGTTTGA

Genome Context

Tertiary structure

YP_004957911.1
ESMFold structure
Source ESMFold
pLDDT 26.3
Oligomeric state monomer
Download structure