Protein

View in Explore
Genbank accession
AII27498.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
TF
Evidence RBPdetect2
Probability 0,61
Protein sequence
MSSRADMIGSGPSSGHYQAGPTPTEEKSMPTYINDELLALGGIVNGILEGGAFPPQGKMPVRWREGMMMYFTEPLDDVYNVGQYKGQKIITSAGVWLYRRERWWKIVDDPSNVIGAVFAYRLTADGTPPSTPPPSSYPPSGWEDTAPVKNSKSEWIWISMAAAYDENTDTYTWNQPTPFSAGVEDGIDGQDGSDGVDGVRGTITVNKETSGSVWNDTEAYNAIINDPRSGGVVLNLDMVNLYNDSEEFSEQRFYSDGVWESFELFVDGNAIVTGTLIGDKIKSDTRITIGGNYDQDVVILDASDVNSRIWVGSTTSTSANFRVTPTGDLYANNGYFGGEVTYQGITGAIGGAVDSSLTNPIQDWSEWFVEDGTSTPTAIMARVTVPRQDYDRVAVVTCVPSLLIATSRTNVDRFGIVWTAANSTGSTLDYHYRVTSVTESGVGYSTTGNAASAFEFVAQNANQAWFKLTNTLAWEVFIPATTSTGDLTIDLKAQFLHATGQAFPVSNFVTFKVPNSTVNVEVSKVNSGISIIN
Physico‐chemical
properties
protein length:533 AA
molecular weight: 57764,12450 Da
isoelectric point:4,36048
aromaticity:0,10694
hydropathy:-0,25141

Domains

View on InterPro

No domain architecture available.

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
AII27498.1
1 533 aa
Domain Start End Length (AA) Confidence
N-terminal 1 327 327 0,9379
Central domain 328 522 196 0,0668
C-terminal 523 533 10 0,9781
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Vibrio phage VPp1 [NCBI] · taxon 1524880
Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes
Host
Vibrio parahaemolyticus [NCBI] · taxon 670
cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales

Coding sequence (CDS)

Genbank protein accession
AII27498.1 [NCBI]
Genbank nucleotide accession
KJ936628.1 [NCBI]
CDS location
range 14125 -> 15726
strand -
CDS
ATGTCAAGTAGAGCAGATATGATTGGTTCAGGTCCAAGCTCAGGTCACTACCAAGCTGGTCCGACACCTACGGAAGAGAAGTCAATGCCAACTTATATCAATGATGAACTCTTGGCGTTAGGTGGTATTGTTAATGGTATCTTGGAGGGTGGGGCATTCCCACCTCAAGGTAAGATGCCAGTGCGTTGGCGTGAGGGTATGATGATGTACTTCACAGAGCCTCTAGACGACGTCTATAATGTAGGTCAATACAAAGGTCAGAAGATTATCACTTCAGCCGGTGTGTGGCTTTACAGGCGTGAGAGATGGTGGAAAATCGTTGATGACCCATCAAATGTTATTGGAGCAGTATTTGCATACCGACTTACTGCTGATGGTACGCCTCCATCAACTCCACCACCATCATCTTATCCTCCAAGTGGTTGGGAAGACACTGCTCCCGTAAAAAATAGTAAATCCGAGTGGATTTGGATTTCTATGGCAGCAGCCTATGACGAGAATACTGACACATATACATGGAACCAACCTACACCTTTTAGTGCAGGTGTTGAAGATGGCATAGATGGGCAGGATGGCTCTGACGGTGTTGATGGAGTGCGAGGTACTATAACAGTCAACAAAGAGACTTCAGGTAGCGTATGGAACGATACAGAGGCATATAACGCTATAATCAATGACCCTCGTTCTGGTGGTGTCGTGTTGAACCTAGATATGGTTAACCTGTATAATGATTCGGAGGAGTTCTCAGAACAACGATTTTATTCAGATGGTGTGTGGGAGTCTTTTGAACTATTTGTGGATGGTAATGCTATAGTAACTGGCACTTTAATTGGCGATAAGATTAAATCTGATACTAGGATTACAATAGGAGGCAACTATGACCAAGATGTGGTAATACTAGATGCTAGCGACGTTAACAGCCGCATTTGGGTTGGTAGTACAACATCAACCTCTGCTAACTTCCGAGTAACACCTACCGGTGACTTGTATGCTAACAATGGCTACTTCGGGGGTGAGGTTACATATCAAGGTATTACGGGTGCAATTGGTGGGGCTGTAGATAGTTCACTCACTAACCCAATACAAGATTGGTCGGAGTGGTTTGTTGAAGATGGTACATCTACACCTACTGCTATCATGGCTCGTGTAACTGTTCCACGTCAGGATTATGACCGTGTGGCTGTTGTTACTTGCGTTCCATCTCTACTAATTGCTACATCACGTACTAACGTTGATAGGTTTGGTATTGTATGGACTGCTGCTAACAGCACAGGCTCTACGCTTGATTACCATTACCGTGTGACATCTGTTACTGAATCTGGGGTAGGATACTCAACTACAGGTAATGCTGCATCTGCATTTGAATTTGTAGCACAGAACGCTAACCAAGCATGGTTTAAACTAACTAATACATTAGCTTGGGAAGTATTTATTCCGGCTACAACTTCAACAGGTGACTTAACAATTGACCTTAAAGCTCAGTTCCTACATGCAACTGGTCAGGCATTTCCTGTATCTAACTTTGTAACATTCAAGGTTCCTAACAGTACGGTGAATGTAGAGGTTAGTAAAGTCAACTCAGGTATCAGTATTATCAACTAA

Genome Context

Tertiary structure

AII27498.1
ESMFold structure
Source ESMFold
pLDDT 62.3
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Complete Genome of a Novel Lytic Vibrio parahaemolyticus Phage VPp1 and Characterization of Its Endolysin for Antibacterial Activities Li,M., Jin,Y., Lin,H., Wang,J. and Jiang,X. 2018 29927621 GenBank