Protein

View in Explore
Genbank accession
UPT53434.1 [GenBank]
Protein name
gene transfer agent protein
RBP type
TF
Evidence RBPdetect
Probability 0,66
TF
Evidence Phold
Probability 1,00
Protein sequence
MKLLRIAAWTVWFMLGWTALAHAGPVVAAIGGLIAAIKASALVQFLVGIALKVGASLIQRAMAKRQPQPGISGQLRVGGNNSFSFIVGDYATAGSLDYVGTWGRSGKTPNAYLTQVVTVSDMMQGGIRSRIFINNELCEIDFEATPVEQGYPVKEYRRNGRDYMWVKVLDGTQTEADPFLLDKFGSDPERPWTADMIGTGSTIVMLTALLNRELLTAMPVGRYEPLPLPLYDPRKDTTVGGDGAHRWGQPETYEATANLLVIAYNIERGIFANGEKVFGPGVSASRLPLPAWFAAMNECDVPTIVADGVGEVDPIYEPQFSGGYEIKVAEHEPADVLEELFKSCNGQIAENGGIYKPHVGAPGLPVMFLTDEDWIVTDPQELDPFKGLEQTFNGATATYPDPEAAWEMKDAPQRLFPDYEAEDDGRRLLADFQFNAVSSPTQVQRLMLSMVRDGRRMRFHRGTLPPVAFMLEPLDTISWTSARNGYIDKLFLISSKDEMTNVNQGVAAQEVDPSDYNWTPGTDKLPWSVGPINPRWPAPIPVAGWSVVASSINDESGTPRRPAIDLHAPGDNDDVRAIQIEVRNGEDELVFSGETPYGDVLADGQTKTFRLSGQWCLPEQPYTVRGRFLPYSGRELLWTGWMAVTTLNIRLGAGDIYPDGLIPDLQEFIDDAIDWIGPGVRELIDDARRLVASVLDMEAGNYTDRQVIRQEVVSSNADARAYALFQIEAATGPGSAIAQAILAVEAELEGKADASALLALTSRVEENEDGISALSQALIDVQAEIEDKADASAVLLLQARVDDVEGDLTSLSNAVIAVDAAVGDVSASGAFRAEALASPGGSWARIGLSASATSGSTFEQAALFLDARTSGSPRSRVVIVADQFAVSSGSTVQNPLVFDGTTLRLAGGVRAAWAQIDNVEIDWADIGTAVIGNLIVQDAMIPSNLITSEDDVSISNQSFVKDGTWKTVCSITLNSPGLKQCLLFRSGSVSETQGTSGSATPLTLGIRVLVDGVVIQTYQNLFSPPTVGSEVRTVTMPATDNIRLHPSTAINAVVSVQCMSSILGAGLNNQSATVNLVGQRNRH
Physico‐chemical
properties
protein length:1083 AA
molecular weight: 116588,08320 Da
isoelectric point:4,54907
aromaticity:0,07572
hydropathy:-0,06270

Domains

Domains [InterPro]
IPR032876
332–482
IPR032876
UPT53434.1
1 1083
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Yong-M2-251
[NCBI] 		2928846 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPT53434.1 [NCBI]
Genbank nucleotide accession
OM868082 [NCBI]
CDS location
range 37512 -> 40763
strand -
CDS
ATGAAGCTTCTACGCATTGCCGCGTGGACCGTCTGGTTCATGCTCGGCTGGACTGCGCTCGCGCATGCCGGGCCTGTGGTGGCCGCGATCGGTGGTCTCATCGCCGCGATCAAGGCCAGCGCGCTCGTCCAGTTCCTCGTCGGCATAGCGCTGAAGGTTGGCGCTTCGCTGATCCAGCGCGCGATGGCCAAGCGCCAGCCGCAGCCGGGCATCAGCGGACAGCTTCGCGTCGGTGGCAACAACTCGTTCTCCTTCATCGTCGGCGACTACGCCACGGCCGGCTCGCTCGACTATGTCGGCACCTGGGGCCGGAGCGGCAAGACACCAAACGCTTACCTGACGCAGGTCGTTACCGTGTCGGACATGATGCAGGGCGGCATCCGGTCCCGCATCTTCATCAACAACGAGCTCTGCGAGATCGACTTCGAGGCGACGCCGGTCGAGCAGGGCTACCCGGTCAAGGAATACCGCCGCAACGGCCGCGACTACATGTGGGTGAAGGTGCTGGACGGCACCCAGACCGAGGCCGATCCGTTCCTGCTCGACAAGTTCGGCTCCGATCCGGAACGTCCGTGGACGGCCGACATGATCGGCACCGGCTCCACGATCGTGATGCTGACGGCGCTGCTCAATCGGGAACTGCTGACCGCCATGCCGGTCGGACGCTACGAGCCGCTGCCGCTGCCGCTCTACGACCCCCGCAAGGACACGACCGTCGGCGGCGACGGGGCGCACCGCTGGGGCCAGCCCGAGACCTACGAGGCGACGGCCAACCTGCTGGTGATCGCCTACAACATCGAGCGCGGCATCTTCGCCAATGGCGAGAAGGTGTTCGGGCCGGGTGTGTCTGCCTCGCGCCTGCCGCTGCCGGCTTGGTTCGCGGCAATGAACGAATGCGACGTGCCGACTATTGTCGCTGATGGTGTCGGCGAGGTCGATCCTATCTACGAGCCGCAGTTCAGCGGCGGCTACGAGATCAAGGTTGCCGAGCACGAGCCGGCCGACGTGCTGGAGGAGCTCTTCAAGTCGTGCAACGGGCAGATCGCCGAGAATGGCGGCATCTACAAGCCGCATGTCGGCGCGCCGGGCCTGCCGGTGATGTTCCTGACTGACGAGGACTGGATCGTCACCGATCCGCAGGAGCTGGACCCTTTCAAGGGGCTGGAGCAGACCTTCAACGGGGCGACGGCGACCTATCCGGACCCCGAAGCAGCATGGGAGATGAAGGACGCACCGCAGCGTCTGTTCCCCGACTACGAGGCGGAAGACGACGGCAGGCGCCTGCTGGCGGATTTCCAGTTCAATGCTGTGTCGAGCCCGACGCAGGTTCAGCGCCTGATGCTGTCGATGGTGCGCGACGGCCGCCGCATGCGCTTCCATCGCGGCACGCTGCCGCCTGTCGCGTTCATGCTGGAGCCGCTGGACACGATCTCGTGGACTTCCGCGCGCAACGGCTACATCGACAAGCTGTTCCTGATCTCGTCGAAGGACGAGATGACGAACGTCAACCAAGGCGTTGCTGCACAGGAAGTCGATCCGTCCGATTACAACTGGACGCCGGGCACAGACAAGCTGCCGTGGTCTGTCGGGCCGATCAATCCGCGGTGGCCGGCGCCGATCCCGGTTGCTGGCTGGAGCGTTGTCGCCTCGTCGATCAACGATGAGAGCGGCACGCCGCGCCGGCCGGCAATCGATCTCCACGCGCCGGGCGACAATGACGACGTTCGGGCAATTCAGATCGAGGTTCGCAACGGCGAAGACGAATTGGTCTTTTCGGGCGAGACGCCCTACGGCGACGTTCTCGCGGACGGCCAGACCAAGACGTTCCGCCTTTCGGGGCAGTGGTGCCTGCCAGAGCAGCCTTACACGGTGCGCGGGCGGTTCTTGCCCTATAGCGGACGTGAACTGCTGTGGACCGGCTGGATGGCCGTCACGACGCTCAACATTCGATTGGGCGCCGGCGACATCTATCCAGACGGGCTTATTCCTGACCTGCAGGAGTTCATCGACGACGCGATCGACTGGATCGGACCGGGCGTTCGCGAGCTTATCGACGACGCGCGCCGTCTTGTCGCTTCTGTGTTGGACATGGAGGCCGGCAACTACACCGACCGCCAGGTTATACGGCAGGAGGTTGTTTCCTCCAATGCCGATGCGCGGGCCTACGCACTGTTTCAGATTGAGGCGGCGACGGGGCCGGGGTCAGCTATTGCCCAGGCAATCCTTGCTGTAGAAGCTGAACTAGAGGGCAAGGCAGACGCCTCGGCGCTTTTGGCGCTCACGTCCAGAGTTGAGGAAAACGAAGACGGCATCTCGGCACTAAGCCAAGCGCTCATCGACGTTCAGGCGGAGATTGAGGATAAAGCTGATGCGTCTGCGGTGCTGTTACTGCAGGCGCGGGTCGATGACGTCGAGGGTGACCTCACGTCGCTTTCCAATGCTGTTATCGCCGTCGATGCGGCAGTGGGTGACGTATCGGCATCCGGCGCATTCCGCGCAGAGGCGCTGGCGTCGCCAGGCGGTTCATGGGCGCGGATCGGCCTTTCTGCATCGGCCACCAGCGGGTCGACGTTTGAGCAGGCGGCACTGTTCTTGGATGCCCGCACGAGCGGATCACCACGAAGCCGCGTCGTCATCGTGGCGGACCAGTTCGCGGTCAGTTCCGGATCCACTGTTCAAAACCCGCTCGTCTTCGACGGTACAACGCTTCGCCTTGCCGGTGGTGTACGGGCAGCATGGGCACAGATCGACAACGTTGAAATCGACTGGGCCGACATCGGCACAGCAGTCATCGGCAACCTGATCGTCCAAGACGCCATGATCCCGTCGAACCTGATTACGTCAGAGGATGACGTATCCATTTCCAATCAGTCGTTTGTGAAGGACGGCACATGGAAAACGGTTTGCTCGATTACCCTCAATAGCCCCGGTCTCAAGCAGTGCCTATTGTTTAGGTCTGGTTCGGTCTCGGAGACGCAGGGAACTTCGGGGAGTGCCACTCCGCTGACGCTTGGCATTAGGGTGCTGGTGGACGGGGTAGTCATACAAACGTACCAGAATCTCTTCTCCCCGCCCACGGTTGGGTCCGAGGTTCGCACCGTAACTATGCCTGCAACGGACAACATACGACTACACCCAAGCACGGCAATCAATGCCGTTGTGTCCGTGCAGTGTATGTCGTCGATCCTCGGTGCTGGCCTTAACAACCAGTCAGCCACGGTCAATCTCGTCGGCCAGCGCAACCGCCACTAG

Tertiary structure

PDB ID
58ebfc2229939459c814fbd11687feaef18658ce0d2bb81fe24866f10808b809
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7323
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of Synechococcus cyanophage Yong-M2-251 Pan,L., Li,D., Lin,W., Qu,C., Cai,R., Qian,M., Wang,F., Zhou,Q., Liu,W. and Tong,Y. 2024-11 — GenBank