Phage RBP Database

Genbank accession

XRA13967.1 [GenBank]

Protein name

endopeptidase tail family protein

RBP type

TSP

Evidence RBPdetect

Probability 0,89

Protein sequence

MESLILKNRKGTFGEILTDFDFGSFKYEYEKNNERSIGFTIYKTSFNADIFDALLNEMLIVWKGQEYVIKSTSIKYDGEIVTNEITAKHLFMEFQNHYIQKDLENEELNNEETEENKPTMTLEQYLEFGFRNNKLDFSYEIVGEFDKRIAIDELGGKNGMEFLIDGAELFNYIYFADNKKIYIYDDETFYRMADLPLIYKYNSSEVQATTSTTDVRTYIQGYGKKKTKTETKNYNPVKPPNLNYTGTFIKERTWKTEVVGATYWKEFECKWGNETLEWNLKKMSKGGKLDVFLDDEHVGSYQCYNKTATTEKIVIAKGLNKGVHRFKAVFRGGIADVDYKDSKPAMYVGTEKSTVLNLTAVLKGSDAYHTYAEYESPNVDTFGWSEAPTVFDDDTLDKDELLETIKAQLNDQPTVEVSTNYLGSMEEKHYIRNDDVKENHMIRFIHQPLGYNLDLKVVKITESHPVVNEPVEVDFSNSPTDIIKIQQRINRNIKTMNNLVQGGSLNSGSSFSMPEGYSEIVGVTLIDD

Physico‐chemical properties

protein length:	528 AA
molecular weight:	60846,50200 Da
isoelectric point:	4,93558
aromaticity:	0,12121
hydropathy:	-0,59924

Domain architecture

XRA13967.1

1 528 aa

ATT 1–87 · STR 88–190 · ENZ 191–237 · STR 238–341 · ENZ 342–488 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:6.20.110.10
ATT

G3DSA:6.20.110.10 G3DSA:3.55.50.40 G3DSA:2.60.120.260

IPR044051
ENZ

IPR044051 Coil

IPR010572
ENZ

IPR010572

XRA13967.1

1528 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1309
STR

DC_1309 DC_0937

XRA13967.1

1528 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:6.20.110.10	ATT	G3DSA:6.20.110.10	1	87	Merged direct domain	G3DSA:6.20.110.10	N-terminal	Low	Positional only	47 proteins / 47 hits
IPR044051	ENZ	DC_0346	4	89	InterPro cluster	Prophage endopeptidase tail, N-terminal	N-terminal	High	Text match	59 proteins / 59 hits
G3DSA:3.55.50.40	STR	G3DSA:3.55.50.40	89	190	Merged direct domain	G3DSA:3.55.50.40	Central	Low	Positional only	63 proteins / 63 hits
Coil	Unmapped	-	96	123	Coils	Coil	-	-	-	-
IPR010572	ENZ	DC_0675	104	488	InterPro cluster	Tail spike domain	Central	High	Text match	419 proteins / 419 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	238	341	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XRA13967.1

1 528 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	101	101	0,8854
Central domain	102	309	209	0,5445
C-terminal	310	528	218	0,0565

Note: Constraints were applied during segmentation.
Fixed 4 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Staphylococcus phage HHU-22 [NCBI] · taxon 3414726

Viruses unclassified bacterial viruses

Host

Staphylococcus sp. [NCBI] · taxon 29387

cellular organisms Bacteria Bacillati Bacillota Bacilli Bacillales

Genbank protein accession

XRA13967.1 [NCBI]

Genbank nucleotide accession

PV454041 [NCBI]

CDS location

range 23883 -> 25469
strand -

CDS

TTGGAAAGTTTAATCTTAAAGAATAGAAAAGGCACGTTTGGTGAAATACTTACTGATTTTGACTTCGGTTCATTCAAATATGAATATGAGAAAAACAATGAACGATCTATTGGTTTTACTATTTACAAAACGTCATTCAATGCTGATATATTTGATGCATTATTAAATGAAATGTTGATAGTGTGGAAAGGTCAAGAGTATGTAATTAAATCTACATCTATTAAGTATGACGGTGAGATTGTTACGAACGAAATTACTGCTAAACACCTATTCATGGAATTTCAAAATCATTATATTCAAAAAGATTTGGAAAATGAAGAATTAAATAATGAGGAAACGGAAGAAAATAAACCCACTATGACACTTGAACAGTACCTTGAATTTGGTTTTAGAAATAATAAATTAGATTTCTCATATGAAATTGTAGGTGAGTTTGATAAACGTATTGCTATCGATGAATTAGGTGGTAAAAACGGTATGGAGTTCCTAATAGATGGTGCTGAATTGTTCAATTACATTTACTTTGCAGACAATAAGAAGATATATATTTACGATGACGAAACATTTTATCGAATGGCGGACTTACCATTAATATACAAATATAATTCAAGCGAAGTACAAGCTACAACTTCCACAACTGATGTTAGGACTTACATTCAAGGTTACGGTAAGAAGAAAACTAAGACTGAAACGAAGAATTATAATCCAGTTAAACCACCCAACTTAAATTATACTGGTACATTCATCAAAGAAAGAACATGGAAAACTGAAGTTGTTGGTGCAACTTATTGGAAAGAATTCGAATGCAAATGGGGTAACGAAACACTTGAATGGAATCTTAAGAAAATGTCAAAAGGCGGTAAGCTTGATGTCTTTTTGGATGATGAGCATGTAGGTAGTTACCAATGCTATAACAAAACAGCTACTACAGAGAAAATTGTTATAGCAAAAGGTTTGAATAAAGGTGTTCATCGATTTAAAGCTGTATTCAGAGGTGGTATAGCCGATGTAGATTATAAAGATTCTAAACCGGCAATGTATGTAGGTACAGAGAAATCAACTGTGCTGAACTTAACAGCTGTATTAAAAGGCAGTGACGCTTATCACACTTACGCTGAATATGAATCGCCTAATGTAGATACGTTTGGTTGGTCAGAAGCACCTACTGTGTTTGATGATGATACGTTAGATAAAGATGAATTACTTGAAACAATCAAAGCACAACTCAACGATCAACCAACAGTTGAAGTTTCAACGAACTACTTGGGTAGTATGGAAGAAAAACATTATATTCGTAATGATGATGTGAAAGAAAATCATATGATTCGTTTTATCCATCAACCACTAGGTTATAACTTAGATTTGAAAGTAGTGAAAATAACCGAATCACATCCAGTTGTGAATGAACCAGTAGAAGTTGATTTTAGTAATTCACCTACGGATATTATAAAAATCCAACAACGCATTAACAGAAATATTAAAACAATGAATAATCTGGTGCAAGGCGGTTCACTAAATAGTGGGTCGTCTTTTTCTATGCCAGAAGGTTATTCAGAAATAGTGGGGGTGACATTAATAGATGACTGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)