Phage RBP Database

Genbank accession

YP_010038082.1 [GenBank]

Protein name

tail protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 1,00

Protein sequence

MSRATQSIFGLAGVVLPFAGAAAPNGWLLCHGQAVSRTTYAHLFAVIGTAYGAGDGSSTFNLPDLRGRVAAGKDNMGGTAAGRLTTAGAGVDGNALGAAGGAQSHTLTTAQMPSHAHAVSDPTHAHSVYDPTHAHTQQSWNLTSFDGTGGPHQVGADAPASGNLGVVNTTTASATGIGIYAAATGISIQAQGGGGAHNNTQPTIVLNHIIKT

Physico‐chemical properties

protein length:	212 AA
molecular weight:	20941,83880 Da
isoelectric point:	6,85390
aromaticity:	0,05189
hydropathy:	-0,00943

Domain architecture

YP_010038082.1

1 212 aa

ATT 9–69 · STR 70–211 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR037053
ATT

IPR037053

SSF88874
STR

SSF88874

IPR011083
ATT

IPR011083

YP_010038082.1

1212 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1651
STR

DC_1651

YP_010038082.1

1212 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR037053	ATT	IPR037053	9	66	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
SSF88874	STR	SSF88874	12	211	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR011083	ATT	DC_0235	13	69	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_010038082.1

1 212 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	10	10	0,0114
Central domain	11	201	192	0,0023
C-terminal	202	212	10	0,9962

Note: Constraints were applied during segmentation.
Sequence started with non-N-terminal domain|C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pseudomonas phage Persinger [NCBI] · taxon 2749430

Uroviricota Caudoviricetes Harrisonburgvirus

Host

Pseudomonas aeruginosa [NCBI] · taxon 287

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales

Genbank protein accession

YP_010038082.1 [NCBI]

Genbank nucleotide accession

NC_054149 [NCBI]

CDS location

range 31575 -> 32213
strand -

CDS

ATGAGTCGAGCGACACAATCAATTTTCGGACTTGCCGGCGTTGTGCTGCCGTTCGCTGGAGCGGCAGCACCTAATGGCTGGCTGCTTTGCCATGGACAGGCAGTAAGTCGCACGACCTATGCGCACCTGTTCGCCGTCATCGGAACCGCCTATGGCGCTGGTGATGGCAGTTCTACTTTCAACCTTCCCGACCTGCGCGGGCGCGTTGCAGCCGGCAAGGACAACATGGGCGGCACGGCTGCAGGCCGACTGACCACTGCAGGCGCTGGCGTGGATGGCAACGCCCTTGGCGCAGCTGGTGGCGCCCAATCTCATACGCTGACGACTGCACAAATGCCGTCACACGCGCATGCCGTTTCTGACCCGACGCACGCGCACAGCGTCTATGACCCGACGCACGCGCATACCCAGCAGTCCTGGAACCTGACCAGCTTCGACGGAACCGGAGGTCCGCACCAGGTCGGCGCTGATGCGCCAGCTAGCGGAAACCTTGGCGTCGTGAACACCACCACGGCGTCAGCTACCGGAATCGGAATCTATGCCGCAGCTACAGGAATCAGCATTCAGGCACAGGGCGGCGGTGGCGCGCACAACAACACCCAGCCGACCATCGTTCTAAACCACATCATCAAGACCTGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)